UHGV-1430257

Genome information

Genome length 31,223 bps

CDS count 45

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-1430257
vOTU ID	vOTU-058344
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0218402
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.78
Jumbo phage	No

Genome content
Genome length	31,223 bps
GC content	53.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.52%
Average CDS length	653.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1430257_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-1430257_1	UniRef90	UniRef90_A0A1W6JQE3	Major capsid protein	NA
UHGV-1430257_1	eggNOG-mapper	1348662.CARG_02595	Phage capsid family	NA
UHGV-1430257_1	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1430257_1	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1430257_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1430257_2	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1430257_2	eggNOG-mapper	1415166.NONO_c17820	NA	NA
UHGV-1430257_2	Structural annotation	PF09343, TIGR02215, COG5448	NA	NA
UHGV-1430257_3	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1430257_4	PHROG	phrog_387	neck protein	connector
UHGV-1430257_4	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-1430257_6	PHROG	phrog_117	major tail protein	tail
UHGV-1430257_6	UniRef90	UniRef90_A0A5J6TT81	Major tail protein	NA
UHGV-1430257_6	eggNOG-mapper	714083.JH370377_gene1321	NA	NA
UHGV-1430257_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1430257_7	PHROG	phrog_8595	tail assembly chaperone	tail
UHGV-1430257_8	PHROG	phrog_1326	tail assembly chaperone	tail
UHGV-1430257_8	UniRef90	UniRef90_UPI001F1FB1CB	NA	NA
UHGV-1430257_8	eggNOG-mapper	1203602.HMPREF1527_01083	NA	NA
UHGV-1430257_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1430257_9	UniRef90	UniRef90_A0A3G2KFG0	Tape measure protein	NA
UHGV-1430257_9	eggNOG-mapper	1120947.ATUX01000001_gene2001	tape measure	NA
UHGV-1430257_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1430257_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1430257_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1430257_10	eggNOG-mapper	1449976.KALB_4974	Phage tail protein	NA
UHGV-1430257_10	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1430257_11	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-1430257_11	eggNOG-mapper	591157.SSLG_03145	NA	NA
UHGV-1430257_11	Structural annotation	PF21567, NF012201	NA	NA
UHGV-1430257_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1430257_13	Structural annotation	PF14879, NF033208, COG4935	NA	NA
UHGV-1430257_15	eggNOG-mapper	208439.AJAP_18220	Peptidoglycan-binding domain 1 protein	NA
UHGV-1430257_15	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1430257_16	UniRef90	UniRef90_A0A8B2EC03	Glycoside hydrolase family 16 protein	NA
UHGV-1430257_16	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-1430257_16	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1430257_16	Structural annotation	PF00722, NF041449, COG3506	NA	NA
UHGV-1430257_17	PHROG	phrog_1299	holin	lysis
UHGV-1430257_17	UniRef90	UniRef90_A0A3Q9RAA0	Holin	NA
UHGV-1430257_17	eggNOG-mapper	1304880.JAGB01000002_gene1702	NA	NA
UHGV-1430257_22	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1430257_22	PHROG	phrog_3123	NA	unknown function
UHGV-1430257_22	UniRef90	UniRef90_A0A160DDI0	RecA-like DNA recombinase	NA
UHGV-1430257_22	eggNOG-mapper	1121378.KB899706_gene1504	NA	NA
UHGV-1430257_22	Pfam	PF16793	RepB DNA-primase from phage plasmid	RepB_primase
UHGV-1430257_22	Pfam	PF13481	AAA domain	AAA_25
UHGV-1430257_22	COG	COG3598	RecA-family ATPase	NA
UHGV-1430257_22	Structural annotation	PF03796, PF16793, MF_00348, TIGR02237, NF040562, COG3598	NA	NA
UHGV-1430257_24	PHROG	phrog_3724	NA	unknown function
UHGV-1430257_24	Pfam	PF05037	NA	DUF669
UHGV-1430257_24	Structural annotation	PF05037, NF004476	NA	NA
UHGV-1430257_26	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1430257_26	eggNOG-mapper	573413.Spirs_2787	plasmid maintenance	NA
UHGV-1430257_26	Pfam	PF13479	AAA domain	AAA_24
UHGV-1430257_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1430257_27	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1430257_27	UniRef90	UniRef90_A0A2P1CKJ6	Exonuclease	NA
UHGV-1430257_27	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1430257_27	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-1430257_28	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-1430257_28	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1430257_28	UniRef90	UniRef90_A0A142KBX8	DNA polymerase I	NA
UHGV-1430257_28	eggNOG-mapper	1340829.S5Y5D9_9CAUD	DNA polymerase family A	NA
UHGV-1430257_28	PADLOC	drt-cluster58	DRT	DRT
UHGV-1430257_28	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-1430257_28	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1430257_28	Structural annotation	PF00476, PF01612, MF_04101, NF011539, COG0749	NA	NA
UHGV-1430257_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1430257_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1430257_30	UniRef90	UniRef90_A0A3Q9RAD8	DNA helicase	NA
UHGV-1430257_30	eggNOG-mapper	5297.GMQ_02353T0	helicase activity	NA
UHGV-1430257_30	PADLOC	DrmD_00010	DrmD	DISARM
UHGV-1430257_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1430257_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1430257_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1430257_30	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1430257_31	KOfam	K03671	trxA; thioredoxin 1	NA
UHGV-1430257_31	UniRef90	UniRef90_A0A7W9Z7X9	Thioredoxin 2	NA
UHGV-1430257_31	eggNOG-mapper	644283.Micau_0689	Belongs to the thioredoxin family	NA
UHGV-1430257_31	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-1430257_31	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-1430257_31	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA
UHGV-1430257_32	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1430257_32	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1430257_32	UniRef90	UniRef90_A0A2E3W5G6	Thymidylate synthase	NA
UHGV-1430257_32	eggNOG-mapper	883169.HMPREF9719_01062	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-1430257_32	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1430257_32	COG	COG0207	Thymidylate synthase	NA
UHGV-1430257_32	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA
UHGV-1430257_33	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-1430257_33	Structural annotation	PF18771, MF_00972, TIGR02571, COG2131	NA	NA
UHGV-1430257_36	eggNOG-mapper	1121370.AQUY01000001_gene963	NA	NA
UHGV-1430257_37	PHROG	phrog_7707	NA	unknown function
UHGV-1430257_37	UniRef90	UniRef90_F4MIN2	Gp42	NA
UHGV-1430257_37	eggNOG-mapper	1458357.BG58_33165	NA	NA
UHGV-1430257_39	Structural annotation	MF_00545, COG2004	NA	NA
UHGV-1430257_41	UniRef90	UniRef90_A0A1G8QSL2	Phage terminase, small subunit, putative, P27 family	NA
UHGV-1430257_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1430257_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1430257_42	UniRef90	UniRef90_A0A1G8QSW8	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1430257_42	eggNOG-mapper	1828.JOKB01000008_gene518	Phage Terminase	NA
UHGV-1430257_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1430257_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1430257_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1430257_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1430257_43	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1430257_43	UniRef90	UniRef90_A0A4Y6EVT5	Portal and MuF-like fusion protein	NA
UHGV-1430257_43	eggNOG-mapper	714083.JH370377_gene1329	Phage portal protein	NA
UHGV-1430257_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1430257_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1430257_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1430257_43	Structural annotation	PF04860, MF_04135, TIGR01537, TIGR01641, COG4695	NA	NA
UHGV-1430257_44	KOfam	K06904	NA	NA
UHGV-1430257_44	PHROG	phrog_3244	head maturation protease	head and packaging
UHGV-1430257_44	UniRef90	UniRef90_UPI00068CADD9	HK97 family phage prohead protease	NA
UHGV-1430257_44	eggNOG-mapper	28358.Q9MBK0_9CAUD	peptidase activity	NA
UHGV-1430257_44	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1430257_44	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1430257_44	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA