UHGV-1430393

Genome information

Genome length 67,484 bps

CDS count 82

Completeness 91.89% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-1430393
vOTU ID	vOTU-013037
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0341985
BioSample	SAMN02334041
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.91
Jumbo phage	No

Genome content
Genome length	67,484 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	89.19%
Average CDS length	737.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1430393_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1430393_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1430393_1	UniRef90	UniRef90_A0A414YGJ7	XRE family transcriptional regulator	NA
UHGV-1430393_1	eggNOG-mapper	1235803.C825_02648	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1430393_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1430393_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1430393_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1430393_2	UniRef90	UniRef90_A0A3R6LFQ0	XRE family transcriptional regulator	NA
UHGV-1430393_2	eggNOG-mapper	1122983.BAJY01000027_gene2017	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1430393_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1430393_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1430393_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1430393_3	Structural annotation	PF19495	NA	NA
UHGV-1430393_5	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-1430393_8	PHROG	phrog_10691	NA	unknown function
UHGV-1430393_8	UniRef90	UniRef90_A0A3L8AFK3	Helicase ATP-binding domain-containing protein	NA
UHGV-1430393_8	eggNOG-mapper	1121447.JONL01000012_gene3405	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins	NA
UHGV-1430393_8	Pfam	PF18825	Large polyvalent protein-associated domain 13	LPD13
UHGV-1430393_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1430393_8	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1430393_8	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1430393_8	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1430393_10	eggNOG-mapper	553178.CAPGI0001_1802	NA	NA
UHGV-1430393_11	PHROG	phrog_16490	NA	unknown function
UHGV-1430393_11	UniRef90	UniRef90_A0A8F1B6S5	Outer capsid protein/viral fiber	NA
UHGV-1430393_11	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-1430393_12	PHROG	phrog_28898	NA	unknown function
UHGV-1430393_12	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-1430393_12	Structural annotation	PF21744	NA	NA
UHGV-1430393_16	PHROG	phrog_13892	minor tail protein	tail
UHGV-1430393_16	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-1430393_18	eggNOG-mapper	1227276.HMPREF9148_00156	NA	NA
UHGV-1430393_19	eggNOG-mapper	1227276.HMPREF9148_00156	NA	NA
UHGV-1430393_21	Structural annotation	PF17994	NA	NA
UHGV-1430393_22	Structural annotation	PF17212	NA	NA
UHGV-1430393_24	PHROG	phrog_26635	NA	unknown function
UHGV-1430393_24	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1430393_25	PHROG	phrog_22323	NA	unknown function
UHGV-1430393_25	eggNOG-mapper	742817.HMPREF9449_01784	NA	NA
UHGV-1430393_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-1430393_26	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-1430393_26	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1430393_28	Structural annotation	PF02368	NA	NA
UHGV-1430393_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1430393_31	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-1430393_31	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1430393_31	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1430393_31	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1430393_32	PHROG	phrog_32516	NA	unknown function
UHGV-1430393_32	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-1430393_32	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1430393_34	PHROG	phrog_27246	NA	unknown function
UHGV-1430393_37	PHROG	phrog_20732	NA	unknown function
UHGV-1430393_37	UniRef90	UniRef90_A0A6G7X1I7	Phage holin family protein	NA
UHGV-1430393_37	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-1430393_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1430393_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1430393_38	PHROG	phrog_822	amidase	lysis
UHGV-1430393_38	UniRef90	UniRef90_A0A646FVZ2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1430393_38	eggNOG-mapper	888832.HMPREF9420_0424	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1430393_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1430393_38	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1430393_38	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1430393_39	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-1430393_40	UniRef90	UniRef90_A0A3R6M5X3	DNA-binding protein	NA
UHGV-1430393_40	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-1430393_43	PHROG	phrog_8684	NA	unknown function
UHGV-1430393_43	UniRef90	UniRef90_A0A413BUU5	YopX domain-containing protein	NA
UHGV-1430393_43	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-1430393_43	Pfam	PF09643	YopX protein	YopX
UHGV-1430393_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1430393_45	Structural annotation	PF18340, NF037951, COG4466	NA	NA
UHGV-1430393_47	PHROG	phrog_10066	NA	unknown function
UHGV-1430393_52	Structural annotation	PF09465, NF005100	NA	NA
UHGV-1430393_59	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1430393_59	UniRef90	UniRef90_UPI0013D18051	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-1430393_59	eggNOG-mapper	1540090.A0A0A0RMM3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1430393_59	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1430393_59	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1430393_59	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1430393_60	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1430393_60	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1430393_60	UniRef90	UniRef90_A0A2L2WN54	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1430393_60	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1430393_60	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1430393_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1430393_60	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-1430393_63	Structural annotation	PF20338	NA	NA
UHGV-1430393_64	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1430393_64	eggNOG-mapper	720554.Clocl_0687	HNH endonuclease	NA
UHGV-1430393_64	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1430393_65	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-1430393_65	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1430393_66	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1430393_66	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1430393_66	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-1430393_66	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-1430393_66	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1430393_66	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1430393_66	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1430393_67	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1430393_67	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1430393_67	UniRef90	UniRef90_UPI001F2ABE86	recombinase RecT	NA
UHGV-1430393_67	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-1430393_67	Pfam	PF03837	RecT family	RecT
UHGV-1430393_67	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1430393_67	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1430393_67	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1430393_68	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1430393_68	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1430393_68	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1430393_68	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1430393_68	Pfam	PF13476	AAA domain	AAA_23
UHGV-1430393_68	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1430393_68	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1430393_69	PHROG	phrog_6095	amidase	lysis
UHGV-1430393_69	UniRef90	UniRef90_UPI001C2CAA27	KilA-N domain-containing protein	NA
UHGV-1430393_69	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-1430393_69	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-1430393_72	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1430393_72	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1430393_72	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-1430393_72	eggNOG-mapper	574376.BAMA_18225	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1430393_72	Pfam	PF00692	dUTPase	dUTPase
UHGV-1430393_72	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1430393_72	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1430393_73	Structural annotation	PF07258	NA	NA
UHGV-1430393_74	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1430393_74	UniRef90	UniRef90_UPI0013E35C2F	NUMOD4 domain-containing protein	NA
UHGV-1430393_74	eggNOG-mapper	763034.HMPREF9446_02093	HNH endonuclease domain protein	NA
UHGV-1430393_74	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1430393_74	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1430393_74	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1430393_74	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1430393_75	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1430393_75	UniRef90	UniRef90_A0A646FV86	Recombinase	NA
UHGV-1430393_75	eggNOG-mapper	585502.HMPREF0645_2608	NA	NA
UHGV-1430393_75	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1430393_75	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1430393_75	Structural annotation	PF05766	NA	NA
UHGV-1430393_78	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-1430393_78	Structural annotation	PF08587	NA	NA
UHGV-1430393_79	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1430393_79	UniRef90	UniRef90_A0A646FWN7	Helix-turn-helix transcriptional regulator	NA
UHGV-1430393_79	eggNOG-mapper	1189619.pgond44_06670	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1430393_79	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1430393_79	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1430393_80	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-1430393_82	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1430393_82	PHROG	phrog_1	integrase	integration and excision
UHGV-1430393_82	UniRef90	UniRef90_G6AYA0	Phage_int_SAM_5 domain-containing protein	NA
UHGV-1430393_82	eggNOG-mapper	1002367.HMPREF0673_01609	Belongs to the 'phage' integrase family	NA
UHGV-1430393_82	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1430393_82	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1430393_82	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1430393_82	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA