UHGV-1430463

Genome information

Genome length 41,789 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1430463
vOTU ID	vOTU-069056
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0277775
BioSample	SAMN03418273
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.62
Jumbo phage	No

Genome content
Genome length	41,789 bps
GC content	53.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	93.48%
Average CDS length	603.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1430463_1	PHROG	phrog_31573	NA	unknown function
UHGV-1430463_1	UniRef90	UniRef90_A0A4Q5C8S3	Histidine kinase	NA
UHGV-1430463_1	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-1430463_2	PHROG	phrog_13589	NA	unknown function
UHGV-1430463_2	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1430463_3	PHROG	phrog_31538	NA	unknown function
UHGV-1430463_4	PHROG	phrog_15594	NA	unknown function
UHGV-1430463_4	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1430463_4	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1430463_5	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-1430463_5	eggNOG-mapper	762968.HMPREF9441_00566	cellulase activity	NA
UHGV-1430463_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1430463_8	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1430463_8	Structural annotation	NF041249, COG4379	NA	NA
UHGV-1430463_9	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-1430463_9	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-1430463_10	PHROG	phrog_1194	NA	unknown function
UHGV-1430463_10	eggNOG-mapper	1235797.C816_04181	NA	NA
UHGV-1430463_10	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1430463_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1430463_11	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1430463_11	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1430463_11	COG	COG1511	NA	NA
UHGV-1430463_11	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1430463_12	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1430463_12	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1430463_12	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-1430463_12	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-1430463_12	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1430463_12	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1430463_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1430463_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1430463_13	UniRef90	UniRef90_R9L641	HicB-like domain-containing protein	NA
UHGV-1430463_13	eggNOG-mapper	1235835.C814_03454	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1430463_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1430463_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1430463_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1430463_14	PHROG	phrog_706	NA	unknown function
UHGV-1430463_14	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-1430463_14	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1430463_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1430463_14	Structural annotation	PF06854	NA	NA
UHGV-1430463_15	PHROG	phrog_11299	NA	unknown function
UHGV-1430463_15	eggNOG-mapper	1235797.C816_04185	NA	NA
UHGV-1430463_15	Structural annotation	PF10666	NA	NA
UHGV-1430463_16	PHROG	phrog_3099	NA	unknown function
UHGV-1430463_16	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-1430463_16	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1430463_17	PHROG	phrog_3266	tail completion	connector
UHGV-1430463_17	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-1430463_17	Structural annotation	PF20765	NA	NA
UHGV-1430463_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1430463_18	UniRef90	UniRef90_UPI001062B845	minor capsid protein	NA
UHGV-1430463_18	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-1430463_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1430463_18	Structural annotation	PF11114	NA	NA
UHGV-1430463_19	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-1430463_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1430463_20	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-1430463_21	PHROG	phrog_212	major head protein	head and packaging
UHGV-1430463_21	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1430463_21	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-1430463_21	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1430463_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1430463_22	UniRef90	UniRef90_UPI000682EB3D	phage scaffolding protein	NA
UHGV-1430463_22	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-1430463_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1430463_22	Structural annotation	PF06810	NA	NA
UHGV-1430463_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1430463_24	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1430463_24	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1430463_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1430463_24	COG	COG2369	NA	NA
UHGV-1430463_24	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1430463_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1430463_25	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1430463_25	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-1430463_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1430463_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1430463_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1430463_27	UniRef90	UniRef90_A0A367GH60	PBSX family phage terminase large subunit	NA
UHGV-1430463_27	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-1430463_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1430463_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1430463_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1430463_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1430463_28	PHROG	phrog_2412	NA	unknown function
UHGV-1430463_28	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-1430463_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1430463_29	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-1430463_29	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-1430463_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1430463_32	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1430463_32	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-1430463_32	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1430463_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1430463_32	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1430463_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1430463_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1430463_33	UniRef90	UniRef90_A0A373SW63	PAPS_reduct domain-containing protein	NA
UHGV-1430463_33	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1430463_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1430463_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1430463_33	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-1430463_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1430463_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1430463_34	UniRef90	UniRef90_UPI001C39E2EC	DNA methylase N-4	NA
UHGV-1430463_34	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-1430463_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1430463_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1430463_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1430463_34	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1430463_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1430463_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1430463_36	UniRef90	UniRef90_UPI001C113985	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1430463_36	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-1430463_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1430463_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1430463_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1430463_37	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1430463_37	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1430463_37	UniRef90	UniRef90_F0SXE5	Primase 2	NA
UHGV-1430463_37	eggNOG-mapper	645991.Sgly_0325	Primase C terminal 2 (PriCT-2)	NA
UHGV-1430463_37	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1430463_37	Pfam	PF13481	AAA domain	AAA_25
UHGV-1430463_37	COG	COG3598	RecA-family ATPase	NA
UHGV-1430463_37	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1430463_38	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1430463_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1430463_38	UniRef90	UniRef90_UPI0011069275	DEAD/DEAH box helicase	NA
UHGV-1430463_38	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-1430463_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1430463_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1430463_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1430463_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1430463_38	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1430463_39	PHROG	phrog_2698	NA	unknown function
UHGV-1430463_39	UniRef90	UniRef90_W0FMJ1	NA	NA
UHGV-1430463_39	eggNOG-mapper	665950.HMPREF1025_02634	NA	NA
UHGV-1430463_39	Structural annotation	PF05037	NA	NA
UHGV-1430463_40	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1430463_40	UniRef90	UniRef90_UPI001C10B6A5	AAA family ATPase	NA
UHGV-1430463_40	eggNOG-mapper	665950.HMPREF1025_02633	AAA domain	NA
UHGV-1430463_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-1430463_40	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1430463_41	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1430463_41	PHROG	phrog_1499	NA	unknown function
UHGV-1430463_41	UniRef90	UniRef90_UPI001C108D96	AAA family ATPase	NA
UHGV-1430463_41	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-1430463_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-1430463_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1430463_41	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1430463_42	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1430463_42	PHROG	phrog_37855	NA	unknown function
UHGV-1430463_42	UniRef90	UniRef90_A0A354MSK6	Spo0A_C domain-containing protein	NA
UHGV-1430463_42	eggNOG-mapper	537013.CLOSTMETH_00381	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1430463_42	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1430463_42	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-1430463_42	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1430463_44	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-1430463_50	UniRef90	UniRef90_A0A354UTE4	HTH cro/C1-type domain-containing protein	NA
UHGV-1430463_50	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-1430463_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1430463_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1430463_52	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1430463_52	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1430463_53	KOfam	K14059	int; integrase	NA
UHGV-1430463_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1430463_53	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-1430463_53	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-1430463_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1430463_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1430463_53	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1430463_57	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-1430463_58	PHROG	phrog_608	holin	lysis
UHGV-1430463_58	UniRef90	UniRef90_UPI0003B5E2DD	phage holin, LLH family	NA
UHGV-1430463_58	eggNOG-mapper	1336234.JAGN01000004_gene510	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1430463_58	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1430463_58	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1430463_59	PHROG	phrog_1863	NA	unknown function
UHGV-1430463_59	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1430463_60	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1430463_60	PHROG	phrog_2649	endolysin	lysis
UHGV-1430463_60	UniRef90	UniRef90_UPI001C11DE07	peptidoglycan-binding protein	NA
UHGV-1430463_60	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1430463_60	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1430463_60	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1430463_60	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-1430463_62	PHROG	phrog_2310	NA	unknown function
UHGV-1430463_62	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-1430463_64	PHROG	phrog_2295	NA	unknown function
UHGV-1430463_64	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1430463_64	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA