UHGV-1431255

Genome information

Genome length 58,119 bps

CDS count 73

Completeness 80.15% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-1431255
vOTU ID	vOTU-025200
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0328219
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.25
Jumbo phage	No

Genome content
Genome length	58,119 bps
GC content	43.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.83%
Average CDS length	732.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1431255_3	PHROG	phrog_873	endolysin	head and packaging
UHGV-1431255_3	UniRef90	UniRef90_A0A316R7Z8	Structural protein P5	NA
UHGV-1431255_3	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-1431255_4	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1431255_4	UniRef90	UniRef90_A0A6A7W1V0	Terminase	NA
UHGV-1431255_4	eggNOG-mapper	1236504.HMPREF2132_11175	Terminase-like family	NA
UHGV-1431255_4	COG	COG5362	Phage terminase large subunit	NA
UHGV-1431255_4	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-1431255_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-1431255_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1431255_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1431255_8	Structural annotation	PF19266, TIGR01633, COG4722	NA	NA
UHGV-1431255_10	PHROG	phrog_10156	NA	unknown function
UHGV-1431255_11	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1431255_11	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1431255_11	UniRef90	UniRef90_A0A1Q6ECR1	TMP_3 domain-containing protein	NA
UHGV-1431255_11	eggNOG-mapper	742727.HMPREF9447_04839	tape measure	NA
UHGV-1431255_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1431255_11	COG	COG1511	NA	NA
UHGV-1431255_12	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-1431255_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1431255_14	Structural annotation	PF16807	NA	NA
UHGV-1431255_16	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1431255_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-1431255_18	eggNOG-mapper	1121100.JCM6294_579	NA	NA
UHGV-1431255_18	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-1431255_19	eggNOG-mapper	1123058.KB894219_gene144	NA	NA
UHGV-1431255_19	Structural annotation	PF02924	NA	NA
UHGV-1431255_20	PHROG	phrog_5824	NA	unknown function
UHGV-1431255_20	eggNOG-mapper	483216.BACEGG_02604	NA	NA
UHGV-1431255_21	eggNOG-mapper	762968.HMPREF9441_01236	Fibronectin type 3 domain	NA
UHGV-1431255_21	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-1431255_23	UniRef90	UniRef90_A0A2D6P8F8	SLT domain-containing protein	NA
UHGV-1431255_23	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1431255_25	KOfam	K07496	K07496; putative transposase	NA
UHGV-1431255_25	PHROG	phrog_506	transposase	integration and excision
UHGV-1431255_25	UniRef90	UniRef90_D5E803	Transposase, IS605 OrfB family	NA
UHGV-1431255_25	eggNOG-mapper	1094980.Mpsy_2377	Probable transposase	NA
UHGV-1431255_25	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-1431255_25	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-1431255_25	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-1431255_25	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-1431255_25	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-1431255_25	COG	COG0675	Transposase	NA
UHGV-1431255_25	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-1431255_29	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1431255_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1431255_29	UniRef90	UniRef90_M1NXL0	Helicase	NA
UHGV-1431255_29	eggNOG-mapper	756280.M4PNZ1_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-1431255_29	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1431255_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1431255_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1431255_29	Structural annotation	PF04851, PF00271, MF_00967, TIGR04095, COG1061	NA	NA
UHGV-1431255_30	PHROG	phrog_5839	NA	unknown function
UHGV-1431255_30	UniRef90	UniRef90_A0A1H1QPU9	NA	NA
UHGV-1431255_30	eggNOG-mapper	1395516.PMO01_05050	NA	NA
UHGV-1431255_30	Pfam	PF11753	NA	DUF3310
UHGV-1431255_32	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1431255_32	UniRef90	UniRef90_A0A374AEZ9	MBL fold metallo-hydrolase	NA
UHGV-1431255_32	eggNOG-mapper	445970.ALIPUT_02692	NA	NA
UHGV-1431255_32	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1431255_32	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-1431255_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1431255_33	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-1431255_33	eggNOG-mapper	748727.CLJU_c31620	Metallo-beta-lactamase superfamily	NA
UHGV-1431255_33	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1431255_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1431255_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1431255_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1431255_35	UniRef90	UniRef90_UPI000418DCE5	recombinase RecT	NA
UHGV-1431255_35	eggNOG-mapper	1391647.AVSV01000022_gene2525	RecT family	NA
UHGV-1431255_35	Pfam	PF03837	RecT family	RecT
UHGV-1431255_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1431255_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1431255_36	PHROG	phrog_1365	NA	unknown function
UHGV-1431255_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1431255_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1431255_37	UniRef90	UniRef90_B0MZX0	AAA_23 domain-containing protein	NA
UHGV-1431255_37	eggNOG-mapper	445970.ALIPUT_02695	AAA domain	NA
UHGV-1431255_37	PADLOC	AAA_15	NA	NA
UHGV-1431255_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-1431255_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1431255_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1431255_38	eggNOG-mapper	1121930.AQXG01000017_gene3151	NA	NA
UHGV-1431255_38	Pfam	PF11325	NA	DUF3127
UHGV-1431255_38	Structural annotation	PF11325, MF_00984, NF006445, COG0629	NA	NA
UHGV-1431255_39	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1431255_39	UniRef90	UniRef90_D3I0N4	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-1431255_39	eggNOG-mapper	873513.HMPREF6485_0886	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1431255_39	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1431255_39	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1431255_39	Structural annotation	PF03819, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-1431255_40	PHROG	phrog_824	NA	unknown function
UHGV-1431255_40	UniRef90	UniRef90_UPI0018DE4300	VRR-NUC domain-containing protein	NA
UHGV-1431255_40	eggNOG-mapper	445970.ALIPUT_02669	VRR_NUC	NA
UHGV-1431255_41	UniRef90	UniRef90_A0A521EJT0	NA	NA
UHGV-1431255_41	eggNOG-mapper	1077285.AGDG01000022_gene1202	COG NOG08810 non supervised orthologous group	NA
UHGV-1431255_41	Pfam	PF19898	NA	DUF6371
UHGV-1431255_41	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1431255_41	Structural annotation	PF19898, MF_04154, NF006382, COG0358	NA	NA
UHGV-1431255_43	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1431255_45	PHROG	phrog_10499	NA	unknown function
UHGV-1431255_45	Structural annotation	MF_00009	NA	NA
UHGV-1431255_46	PHROG	phrog_8684	NA	unknown function
UHGV-1431255_46	UniRef90	UniRef90_R6YLI2	YopX domain-containing protein	NA
UHGV-1431255_46	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-1431255_46	Pfam	PF09643	YopX protein	YopX
UHGV-1431255_46	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1431255_46	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1431255_47	PHROG	phrog_874	NA	unknown function
UHGV-1431255_47	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-1431255_47	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1431255_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1431255_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1431255_48	UniRef90	UniRef90_A0A396F778	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1431255_48	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1431255_48	PADLOC	SspD_00001	SspD	SSP
UHGV-1431255_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1431255_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1431255_48	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-1431255_49	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1431255_49	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1431255_49	UniRef90	UniRef90_A0A3R5X8M2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1431255_49	eggNOG-mapper	1122947.FR7_2498	Cytosine-specific methyltransferase	NA
UHGV-1431255_49	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1431255_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1431255_49	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1431255_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1431255_49	Structural annotation	PF00145, MF_02126, TIGR00675, COG0270	NA	NA
UHGV-1431255_50	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-1431255_52	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-1431255_54	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1431255_54	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1431255_54	UniRef90	UniRef90_A0A1Q6ECL6	SF3 helicase domain-containing protein	NA
UHGV-1431255_54	eggNOG-mapper	445335.CBN_1368	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-1431255_54	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1431255_54	Pfam	PF19263	NA	DUF5906
UHGV-1431255_54	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1431255_54	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1431255_54	Structural annotation	PF04735, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1431255_56	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1431255_56	eggNOG-mapper	1198452.Jab_2c02300	HNH endonuclease domain protein	NA
UHGV-1431255_57	eggNOG-mapper	748727.CLJU_c31390	HNH endonuclease	NA
UHGV-1431255_59	PHROG	phrog_5149	NA	unknown function
UHGV-1431255_61	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1431255_61	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1431255_61	eggNOG-mapper	1168067.JAGP01000001_gene637	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-1431255_61	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1431255_61	NCBIFam	TIGR03284.1	thymidylate synthase	NA
UHGV-1431255_61	COG	COG0207	Thymidylate synthase	NA
UHGV-1431255_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1431255_62	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1431255_62	UniRef90	UniRef90_A0A7X6VFI3	Recombinase family protein	NA
UHGV-1431255_62	eggNOG-mapper	1313421.JHBV01000138_gene1205	COGs COG1961 Site-specific recombinase DNA invertase Pin homologs	NA
UHGV-1431255_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1431255_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1431255_62	Structural annotation	PF00239, PF07508, NF009949, COG1961	NA	NA
UHGV-1431255_63	UniRef90	UniRef90_A0A5J4SUU1	HTH cro/C1-type domain-containing protein	NA
UHGV-1431255_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1431255_63	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1431255_64	PHROG	phrog_9562	NA	unknown function
UHGV-1431255_64	UniRef90	UniRef90_UPI001C3D9077	NA	NA
UHGV-1431255_64	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-1431255_64	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1431255_64	Pfam	PF19062	NA	DUF5758
UHGV-1431255_64	COG	COG1357	NA	NA
UHGV-1431255_64	Structural annotation	PF19062, PF13599	NA	NA
UHGV-1431255_68	UniRef90	UniRef90_A0A345BP07	Restriction endonuclease	NA
UHGV-1431255_68	eggNOG-mapper	679935.Alfi_1855	NA	NA
UHGV-1431255_68	Structural annotation	PF18275	NA	NA
UHGV-1431255_69	eggNOG-mapper	470145.BACCOP_01117	NA	NA
UHGV-1431255_72	PHROG	phrog_26822	NA	unknown function
UHGV-1431255_72	eggNOG-mapper	742727.HMPREF9447_04846	Phage minor structural protein	NA
UHGV-1431255_72	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1431255_72	COG	COG4926	Phage-related protein	NA