UHGV-1432119

Genome information

vOTU vOTU-020875

Genome length 41,866 bps

CDS count 58

Completeness 51.57% (medium-quality)

geNomad score 0.9465

Prediction confidence Confident

Genome information
Genome ID	UHGV-1432119
vOTU ID	vOTU-020875
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0278147
BioSample	SAMN00791921
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9465
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.33
Jumbo phage	No

Genome content
Genome length	41,866 bps
GC content	54.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.81%
Average CDS length	658.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1432119_3	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-1432119_3	eggNOG-mapper	411464.DESPIG_01294	NA	NA
UHGV-1432119_4	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1432119_4	UniRef90	UniRef90_E5Y1W0	Terminase_6C domain-containing protein	NA
UHGV-1432119_4	eggNOG-mapper	563192.HMPREF0179_00169	Terminase RNaseH-like domain	NA
UHGV-1432119_4	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1432119_4	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1432119_4	COG	COG5362	Phage terminase large subunit	NA
UHGV-1432119_4	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1432119_5	KOfam	K09961	NA	NA
UHGV-1432119_5	PHROG	phrog_146	portal protein	head and packaging
UHGV-1432119_5	UniRef90	UniRef90_E5Y1W1	HI1409 family phage-associated protein	NA
UHGV-1432119_5	eggNOG-mapper	563192.HMPREF0179_00170	Phage-associated protein, HI1409 family	NA
UHGV-1432119_5	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-1432119_5	COG	COG3567	NA	NA
UHGV-1432119_5	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-1432119_6	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1432119_6	UniRef90	UniRef90_E5Y1W2	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-1432119_6	eggNOG-mapper	563192.HMPREF0179_00171	Portal protein	NA
UHGV-1432119_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1432119_6	COG	COG2369	NA	NA
UHGV-1432119_6	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1432119_7	KOfam	K09960	NA	NA
UHGV-1432119_7	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-1432119_7	eggNOG-mapper	563192.HMPREF0179_00172	NA	NA
UHGV-1432119_7	Pfam	PF09979	NA	DUF2213
UHGV-1432119_7	COG	COG3566	NA	NA
UHGV-1432119_7	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-1432119_8	Pfam	PF11863	NA	DUF3383
UHGV-1432119_9	PHROG	phrog_264	major head protein	head and packaging
UHGV-1432119_9	UniRef90	UniRef90_A0A7C9G8W4	NA	NA
UHGV-1432119_9	eggNOG-mapper	563192.HMPREF0179_00174	NA	NA
UHGV-1432119_9	Pfam	PF09950	NA	DUF2184
UHGV-1432119_9	COG	COG4834	NA	NA
UHGV-1432119_9	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-1432119_11	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-1432119_11	Pfam	PF13262	NA	DUF4054
UHGV-1432119_12	PHROG	phrog_222	tail protein	tail
UHGV-1432119_12	UniRef90	UniRef90_A0A7S5RMU3	Putative RNA polymerase protein	NA
UHGV-1432119_12	eggNOG-mapper	1410620.SHLA_15c000740	NA	NA
UHGV-1432119_14	Structural annotation	PF05657	NA	NA
UHGV-1432119_15	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-1432119_15	UniRef90	UniRef90_A0A7C9K2A2	NA	NA
UHGV-1432119_15	eggNOG-mapper	563192.HMPREF0179_00180	NA	NA
UHGV-1432119_15	Pfam	PF11863	NA	DUF3383
UHGV-1432119_15	Structural annotation	PF11863, COG4386	NA	NA
UHGV-1432119_16	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-1432119_16	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-1432119_17	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-1432119_18	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-1432119_18	UniRef90	UniRef90_A0A3S3C8R0	Phage tail tape measure protein	NA
UHGV-1432119_18	eggNOG-mapper	1121289.JHVL01000019_gene659	tape measure	NA
UHGV-1432119_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1432119_19	PHROG	phrog_817	tail fiber protein	tail
UHGV-1432119_19	eggNOG-mapper	1444712.BN1013_02397	NA	NA
UHGV-1432119_19	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-1432119_19	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-1432119_21	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-1432119_21	eggNOG-mapper	160492.XF_1593	NA	NA
UHGV-1432119_21	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1432119_22	UniRef90	UniRef90_E5Y1Y2	Gp138_N domain-containing protein	NA
UHGV-1432119_22	eggNOG-mapper	563192.HMPREF0179_00191	Baseplate assembly protein	NA
UHGV-1432119_22	Pfam	PF18352	NA	Gp138_N
UHGV-1432119_22	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-1432119_22	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-1432119_23	PHROG	phrog_120	baseplate protein	tail
UHGV-1432119_23	eggNOG-mapper	563192.HMPREF0179_00194	NA	NA
UHGV-1432119_24	PHROG	phrog_6	baseplate protein	tail
UHGV-1432119_24	UniRef90	UniRef90_E5Y1Y6	Baseplate_J domain-containing protein	NA
UHGV-1432119_24	eggNOG-mapper	563192.HMPREF0179_00195	homolog of phage Mu protein gp47	NA
UHGV-1432119_24	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1432119_24	COG	COG3299	NA	NA
UHGV-1432119_24	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1432119_25	PHROG	phrog_587	structural protein	head and packaging
UHGV-1432119_25	Pfam	PF11041	NA	DUF2612
UHGV-1432119_25	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-1432119_26	eggNOG-mapper	563192.HMPREF0179_00197	tail collar domain protein	NA
UHGV-1432119_26	COG	COG4675	Phage tail collar domain	NA
UHGV-1432119_27	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1432119_27	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1432119_27	UniRef90	UniRef90_A0A316MCH4	HicB-like domain-containing protein	NA
UHGV-1432119_27	eggNOG-mapper	563192.HMPREF0179_02958	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1432119_27	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1432119_27	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1432119_27	Structural annotation	PF15919, TIGR04563, COG1598, COG4710	NA	NA
UHGV-1432119_28	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-1432119_28	UniRef90	UniRef90_UPI0013ECBB68	ORF6C domain-containing protein	NA
UHGV-1432119_28	eggNOG-mapper	411464.DESPIG_01325	P22_AR N-terminal domain	NA
UHGV-1432119_28	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-1432119_28	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1432119_28	Structural annotation	PF10547, NF033622, COG3617	NA	NA
UHGV-1432119_29	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-1432119_29	eggNOG-mapper	1054213.HMPREF9946_03134	Phage Mu protein F like protein	NA
UHGV-1432119_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1432119_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1432119_29	COG	COG2369	NA	NA
UHGV-1432119_30	KOfam	K16697	tuaC; teichuronic acid biosynthesis glycosyltransferase TuaC [EC:2.4.-.-]	NA
UHGV-1432119_30	UniRef90	UniRef90_A0A316MP35	Glycos_transf_1 domain-containing protein	NA
UHGV-1432119_30	eggNOG-mapper	395961.Cyan7425_3361	transferase activity, transferring glycosyl groups	NA
UHGV-1432119_30	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-1432119_30	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-1432119_31	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1432119_33	KOfam	K14059	int; integrase	NA
UHGV-1432119_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1432119_33	UniRef90	UniRef90_UPI000496F64A	tyrosine-type recombinase/integrase	NA
UHGV-1432119_33	eggNOG-mapper	596152.DesU5LDRAFT_3031	Belongs to the 'phage' integrase family	NA
UHGV-1432119_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1432119_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1432119_33	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1432119_35	eggNOG-mapper	1408428.JNJP01000012_gene1089	NA	NA
UHGV-1432119_36	PHROG	phrog_874	NA	unknown function
UHGV-1432119_36	UniRef90	UniRef90_UPI00191667AB	morphogenetic protein	NA
UHGV-1432119_36	eggNOG-mapper	690850.Desaf_1948	NA	NA
UHGV-1432119_36	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1432119_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1432119_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1432119_40	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1432119_40	UniRef90	UniRef90_UPI0013EBF0F0	DNA cytosine methyltransferase	NA
UHGV-1432119_40	eggNOG-mapper	1408428.JNJP01000034_gene1488	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1432119_40	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1432119_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1432119_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1432119_40	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1432119_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1432119_42	UniRef90	UniRef90_A0A0J5NRY8	NA	NA
UHGV-1432119_42	eggNOG-mapper	665942.HMPREF1022_00116	PFAM Gp157 family protein	NA
UHGV-1432119_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1432119_42	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1432119_43	PHROG	phrog_2340	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1432119_43	UniRef90	UniRef90_K4F726	Baseplate wedge protein gp25	NA
UHGV-1432119_43	eggNOG-mapper	1048207.F8UBT5_9CAUD	NA	NA
UHGV-1432119_43	Structural annotation	PF18275	NA	NA
UHGV-1432119_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1432119_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1432119_44	UniRef90	UniRef90_Q1MR30	Single-stranded DNA-binding protein	NA
UHGV-1432119_44	eggNOG-mapper	363253.LI0492	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1432119_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1432119_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1432119_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1432119_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1432119_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1432119_45	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1432119_45	UniRef90	UniRef90_A0A6M3JKW5	Putative Erf family protein	NA
UHGV-1432119_45	eggNOG-mapper	665942.HMPREF1022_00118	ERF superfamily	NA
UHGV-1432119_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-1432119_45	Structural annotation	PF04404	NA	NA
UHGV-1432119_51	KOfam	K09667	OGT; protein O-GlcNAc transferase [EC:2.4.1.255]	NA
UHGV-1432119_51	UniRef90	UniRef90_A0A8J7M0S2	Tetratricopeptide repeat protein	NA
UHGV-1432119_51	eggNOG-mapper	555779.Dthio_PD1187	TPR repeat	NA
UHGV-1432119_51	Pfam	PF00515	Tetratricopeptide repeat	TPR_1
UHGV-1432119_51	Pfam	PF13181	Tetratricopeptide repeat	TPR_8
UHGV-1432119_51	COG	COG3063	Type IV pilus assembly protein PilF/PilW	NA
UHGV-1432119_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1432119_52	UniRef90	UniRef90_A0A2V2GKD2	Phage repressor protein	NA
UHGV-1432119_52	eggNOG-mapper	665942.HMPREF1022_00127	Peptidase S24-like	NA
UHGV-1432119_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1432119_52	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1432119_52	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1432119_53	UniRef90	UniRef90_UPI001D0BB1CE	helix-turn-helix domain-containing protein	NA
UHGV-1432119_53	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-1432119_57	PHROG	phrog_25711	NA	unknown function
UHGV-1432119_57	UniRef90	UniRef90_A0A5W3RF00	Replication protein	NA
UHGV-1432119_57	eggNOG-mapper	1408428.JNJP01000025_gene276	NA	NA
UHGV-1432119_57	Structural annotation	PF09681, TIGR01714, COG1654	NA	NA
UHGV-1432119_58	PHROG	phrog_10105	NA	unknown function
UHGV-1432119_58	UniRef90	UniRef90_A0A0X8JIK1	NA	NA
UHGV-1432119_58	eggNOG-mapper	457398.HMPREF0326_01458	NA	NA
UHGV-1432119_58	Pfam	PF20081	NA	DUF6475