UHGV-1432284

Genome information

vOTU vOTU-011999

Genome length 41,924 bps

CDS count 59

Completeness 99.34% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-1432284
vOTU ID	vOTU-011999
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0278428
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.73
Jumbo phage	No

Genome content
Genome length	41,924 bps
GC content	42.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.97%
Average CDS length	663.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1432284_1	KOfam	K14059	int; integrase	NA
UHGV-1432284_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1432284_1	UniRef90	UniRef90_UPI001C00B0A4	tyrosine-type recombinase/integrase	NA
UHGV-1432284_1	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-1432284_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1432284_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1432284_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1432284_2	PHROG	phrog_17658	NA	unknown function
UHGV-1432284_2	UniRef90	UniRef90_UPI0014004675	SHOCT domain-containing protein	NA
UHGV-1432284_2	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-1432284_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1432284_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1432284_3	UniRef90	UniRef90_UPI001896B7F1	helix-turn-helix domain-containing protein	NA
UHGV-1432284_3	eggNOG-mapper	742740.HMPREF9474_02386	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1432284_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1432284_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1432284_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1432284_3	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-1432284_4	PHROG	phrog_34107	NA	unknown function
UHGV-1432284_4	eggNOG-mapper	476272.RUMHYD_02829	NA	NA
UHGV-1432284_8	eggNOG-mapper	509191.AEDB02000033_gene5150	NA	NA
UHGV-1432284_8	Structural annotation	PF18330, NF007435, COG3691	NA	NA
UHGV-1432284_9	UniRef90	UniRef90_A0A413QWF3	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-1432284_9	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-1432284_9	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1432284_10	PHROG	phrog_6058	NA	unknown function
UHGV-1432284_10	UniRef90	UniRef90_UPI001D0FA05E	helix-turn-helix domain-containing protein	NA
UHGV-1432284_10	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-1432284_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1432284_10	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-1432284_11	PHROG	phrog_6247	DNA topoisomerase	DNA, RNA and nucleotide metabolism
UHGV-1432284_11	eggNOG-mapper	913865.DOT_1568	NA	NA
UHGV-1432284_11	Structural annotation	PF21180, MF_00132, NF003335, COG4026	NA	NA
UHGV-1432284_12	PHROG	phrog_5070	NA	unknown function
UHGV-1432284_12	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-1432284_12	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1432284_12	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1432284_12	Structural annotation	NF040481	NA	NA
UHGV-1432284_13	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1432284_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1432284_13	UniRef90	UniRef90_A0A849XTM5	DEAD/DEAH box helicase	NA
UHGV-1432284_13	eggNOG-mapper	742740.HMPREF9474_02377	snf2 family	NA
UHGV-1432284_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1432284_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1432284_13	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1432284_16	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1432284_16	UniRef90	UniRef90_UPI001C014652	VRR-NUC domain-containing protein	NA
UHGV-1432284_16	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-1432284_16	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-1432284_16	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-1432284_17	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1432284_17	PHROG	phrog_5889	NA	unknown function
UHGV-1432284_17	UniRef90	UniRef90_UPI001C01F314	HD domain-containing protein	NA
UHGV-1432284_17	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-1432284_17	Pfam	PF01966	HD domain	HD
UHGV-1432284_17	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1432284_17	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1432284_20	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1432284_20	UniRef90	UniRef90_UPI001899263F	AAA family ATPase	NA
UHGV-1432284_20	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-1432284_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-1432284_20	Structural annotation	PF13479, MF_00350, TIGR01618, COG2087	NA	NA
UHGV-1432284_22	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1432284_22	UniRef90	UniRef90_A0A415N104	NA	NA
UHGV-1432284_22	eggNOG-mapper	742740.HMPREF9474_02367	NA	NA
UHGV-1432284_22	Pfam	PF05037	NA	DUF669
UHGV-1432284_22	Structural annotation	PF05037	NA	NA
UHGV-1432284_23	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1432284_23	UniRef90	UniRef90_A0A1G5G0M3	DNA polymerase	NA
UHGV-1432284_23	eggNOG-mapper	742740.HMPREF9474_02366	DNA polymerase elongation subunit (Family B)	NA
UHGV-1432284_23	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1432284_23	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1432284_24	Structural annotation	PF05384, MF_00683, NF003844	NA	NA
UHGV-1432284_25	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1432284_25	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1432284_25	UniRef90	UniRef90_A0A374E6H3	DNA primase	NA
UHGV-1432284_25	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-1432284_25	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1432284_25	Pfam	PF19263	NA	DUF5906
UHGV-1432284_25	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1432284_25	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1432284_25	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1432284_25	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1432284_26	eggNOG-mapper	411470.RUMGNA_02040	NA	NA
UHGV-1432284_29	PHROG	phrog_6568	NA	unknown function
UHGV-1432284_29	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1432284_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1432284_30	eggNOG-mapper	742740.HMPREF9474_02360	NA	NA
UHGV-1432284_30	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-1432284_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1432284_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1432284_31	UniRef90	UniRef90_UPI001D1288A8	terminase small subunit	NA
UHGV-1432284_31	eggNOG-mapper	1095750.HMPREF9970_1030	Terminase small subunit	NA
UHGV-1432284_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1432284_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1432284_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1432284_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1432284_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1432284_32	UniRef90	UniRef90_A0A374E8M6	PBSX family phage terminase large subunit	NA
UHGV-1432284_32	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-1432284_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1432284_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1432284_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1432284_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-1432284_32	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1432284_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1432284_33	PHROG	phrog_1233	NA	unknown function
UHGV-1432284_33	Structural annotation	PF13058	NA	NA
UHGV-1432284_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-1432284_34	UniRef90	UniRef90_A0A374E6B1	Phage portal protein	NA
UHGV-1432284_34	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1432284_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1432284_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1432284_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1432284_35	UniRef90	UniRef90_A0A415N157	Phage_Mu_F domain-containing protein	NA
UHGV-1432284_35	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-1432284_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1432284_35	COG	COG2369	NA	NA
UHGV-1432284_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1432284_36	UniRef90	UniRef90_R5P5B5	Conserved domain protein	NA
UHGV-1432284_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1432284_37	UniRef90	UniRef90_UPI001373E5C4	phage scaffolding protein	NA
UHGV-1432284_37	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-1432284_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1432284_37	Structural annotation	PF06810	NA	NA
UHGV-1432284_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-1432284_38	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-1432284_38	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-1432284_38	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1432284_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1432284_39	PHROG	phrog_1236	head protein	head and packaging
UHGV-1432284_39	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-1432284_39	Structural annotation	PF05135	NA	NA
UHGV-1432284_40	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-1432284_40	UniRef90	UniRef90_UPI00156E52AA	head-tail adaptor protein	NA
UHGV-1432284_40	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-1432284_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1432284_41	UniRef90	UniRef90_UPI00156E66A4	HK97 gp10 family phage protein	NA
UHGV-1432284_41	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-1432284_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1432284_42	PHROG	phrog_957	head protein	head and packaging
UHGV-1432284_42	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-1432284_42	Structural annotation	PF12691	NA	NA
UHGV-1432284_43	PHROG	phrog_885	major tail protein	tail
UHGV-1432284_43	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-1432284_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1432284_45	PHROG	phrog_1021	NA	unknown function
UHGV-1432284_45	eggNOG-mapper	1536769.P40081_01110	NA	NA
UHGV-1432284_46	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-1432284_46	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-1432284_47	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-1432284_47	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1432284_47	eggNOG-mapper	1140001.I571_01843	phage tail tape measure protein	NA
UHGV-1432284_47	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1432284_47	COG	COG5412	Phage-related protein	NA
UHGV-1432284_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1432284_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1432284_48	UniRef90	UniRef90_A0A374E6F6	MtfA protein	NA
UHGV-1432284_48	eggNOG-mapper	1235793.C809_01929	phage tail	NA
UHGV-1432284_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-1432284_48	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-1432284_49	PHROG	phrog_9886	NA	unknown function
UHGV-1432284_49	UniRef90	UniRef90_UPI00189730CA	phage tail protein	NA
UHGV-1432284_49	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-1432284_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1432284_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1432284_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1432284_49	COG	COG4926	Phage-related protein	NA
UHGV-1432284_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1432284_51	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-1432284_51	PHROG	phrog_5302	tail protein	tail
UHGV-1432284_51	UniRef90	UniRef90_A0A564WU27	Chromosome partition protein Smc	NA
UHGV-1432284_51	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1432284_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1432284_52	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1432284_52	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1432284_52	UniRef90	UniRef90_UPI001896F20B	RNA-directed DNA polymerase	NA
UHGV-1432284_52	eggNOG-mapper	742740.HMPREF9474_02336	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-1432284_52	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1432284_52	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1432284_52	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1432284_52	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1432284_53	PHROG	phrog_18126	NA	unknown function
UHGV-1432284_54	PHROG	phrog_1382	NA	unknown function
UHGV-1432284_54	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-1432284_54	eggNOG-mapper	1158610.UC3_02335	NA	NA
UHGV-1432284_54	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1432284_54	Structural annotation	NF040910	NA	NA
UHGV-1432284_55	PHROG	phrog_1382	NA	unknown function
UHGV-1432284_55	eggNOG-mapper	742740.HMPREF9474_02334	NA	NA
UHGV-1432284_55	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1432284_56	PHROG	phrog_4105	NA	unknown function
UHGV-1432284_56	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1432284_57	PHROG	phrog_10091	holin	lysis
UHGV-1432284_57	UniRef90	UniRef90_A0A374E7T7	Phage holin	NA
UHGV-1432284_57	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-1432284_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1432284_57	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1432284_57	COG	COG5546	NA	NA
UHGV-1432284_57	Structural annotation	COG5546	NA	NA
UHGV-1432284_58	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1432284_58	PHROG	phrog_3513	endolysin	lysis
UHGV-1432284_58	UniRef90	UniRef90_UPI001C3BEE22	Glucosaminidase domain-containing protein	NA
UHGV-1432284_58	eggNOG-mapper	483218.BACPEC_01324	amidase activity	NA
UHGV-1432284_58	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1432284_58	Pfam	PF05257	CHAP domain	CHAP
UHGV-1432284_58	Pfam	PF07653	Variant SH3 domain	SH3_2
UHGV-1432284_58	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1432284_58	COG	COG1388	LysM repeat	NA
UHGV-1432284_58	Structural annotation	PF08230, PF01832, PF10030, NF038016, TIGR02594, COG1705, COG4322	NA	NA