UHGV-1432299

Genome information

Genome length 31,279 bps

CDS count 64

Completeness 54.25% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1432299
vOTU ID	vOTU-024173
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0218415
BioSample	SAMEA40028668
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.62
Jumbo phage	No

Genome content
Genome length	31,279 bps
GC content	48.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	80.80%
Average CDS length	397.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1432299_2	PHROG	phrog_15303	NA	unknown function
UHGV-1432299_6	PHROG	phrog_16490	NA	unknown function
UHGV-1432299_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1432299_7	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1432299_8	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1432299_10	PHROG	phrog_7070	NA	unknown function
UHGV-1432299_10	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-1432299_13	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-1432299_13	PHROG	phrog_3757	NA	unknown function
UHGV-1432299_13	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-1432299_13	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-1432299_13	PADLOC	IetA_00002	NA	ietAS
UHGV-1432299_13	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1432299_13	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-1432299_13	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-1432299_14	Structural annotation	PF07878	NA	NA
UHGV-1432299_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1432299_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1432299_16	UniRef90	UniRef90_A0A349QN03	Chromosome partitioning protein ParA	NA
UHGV-1432299_16	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1432299_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-1432299_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1432299_16	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1432299_18	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1432299_18	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1432299_18	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1432299_18	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1432299_18	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1432299_18	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1432299_18	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-1432299_19	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1432299_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1432299_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1432299_19	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1432299_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1432299_23	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1432299_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1432299_24	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-1432299_24	eggNOG-mapper	411460.RUMTOR_00063	helix-turn-helix	NA
UHGV-1432299_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1432299_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1432299_24	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1432299_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1432299_25	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1432299_25	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-1432299_25	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1432299_25	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1432299_25	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1432299_25	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1432299_25	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1432299_25	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1432299_27	Structural annotation	TIGR03826	NA	NA
UHGV-1432299_28	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1432299_28	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1432299_30	Structural annotation	PF14143	NA	NA
UHGV-1432299_31	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-1432299_31	eggNOG-mapper	1443125.Z962_02300	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1432299_31	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1432299_31	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1432299_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1432299_33	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-1432299_33	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1432299_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-1432299_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1432299_34	PHROG	phrog_18107	NA	unknown function
UHGV-1432299_34	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-1432299_34	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-1432299_34	Structural annotation	PF05037	NA	NA
UHGV-1432299_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1432299_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1432299_36	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1432299_36	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1432299_36	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1432299_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1432299_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1432299_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1432299_36	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1432299_39	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1432299_39	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1432299_39	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1432299_39	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1432299_44	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-1432299_47	Structural annotation	PF16677	NA	NA
UHGV-1432299_49	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1432299_49	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1432299_49	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1432299_49	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1432299_50	Structural annotation	PF04319, COG4991	NA	NA
UHGV-1432299_55	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1432299_55	eggNOG-mapper	97139.C824_00027	Restriction alleviation protein Lar	NA
UHGV-1432299_55	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1432299_55	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1432299_56	PHROG	phrog_15768	NA	unknown function
UHGV-1432299_56	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-1432299_56	eggNOG-mapper	402612.FP2295	NA	NA
UHGV-1432299_56	Pfam	PF19808	NA	DUF6291
UHGV-1432299_56	Structural annotation	PF19808	NA	NA
UHGV-1432299_57	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1432299_57	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1432299_57	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1432299_57	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1432299_57	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1432299_57	COG	COG0305	Replicative DNA helicase	NA
UHGV-1432299_57	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1432299_58	PHROG	phrog_419	NA	unknown function
UHGV-1432299_58	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-1432299_58	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-1432299_58	Structural annotation	PF14083	NA	NA
UHGV-1432299_59	PHROG	phrog_1709	NA	unknown function
UHGV-1432299_59	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-1432299_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1432299_61	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-1432299_61	COG	COG5377	Phage-related protein, predicted endonuclease	NA