UHGV-1433077

Genome information

Genome length 40,071 bps

CDS count 54

Completeness 92.16% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1433077
vOTU ID	vOTU-060161
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0268934
BioSample	SAMEA2738015
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.16% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.15
Jumbo phage	No

Genome content
Genome length	40,071 bps
GC content	62.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.62%
Average CDS length	698.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1433077_2	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-1433077_4	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1433077_4	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1433077_4	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-1433077_4	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-1433077_4	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1433077_4	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1433077_4	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1433077_6	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1433077_6	UniRef90	UniRef90_UPI001BCD932B	helix-turn-helix domain-containing protein	NA
UHGV-1433077_6	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-1433077_6	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1433077_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1433077_6	Structural annotation	PF03428, MF_01909, NF008122, COG2345	NA	NA
UHGV-1433077_8	PHROG	phrog_2131	NA	unknown function
UHGV-1433077_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1433077_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1433077_9	UniRef90	UniRef90_A0A7L5AQ48	Phage antirepressor Ant	NA
UHGV-1433077_9	eggNOG-mapper	1451189.CFAL_11875	BRO family, N-terminal domain	NA
UHGV-1433077_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1433077_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1433077_9	COG	COG3617	Prophage antirepressor	NA
UHGV-1433077_9	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-1433077_13	PHROG	phrog_226	minor tail protein	tail
UHGV-1433077_13	eggNOG-mapper	525246.HMPREF0058_0740	NA	NA
UHGV-1433077_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1433077_14	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1433077_14	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1433077_14	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-1433077_14	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1433077_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1433077_14	Structural annotation	PF05203, PF20441, PF03354, MF_04146, MF_01420, NF005852, TIGR01547, COG4626, COG1372	NA	NA
UHGV-1433077_15	PHROG	phrog_104	portal protein	head and packaging
UHGV-1433077_15	UniRef90	UniRef90_W1VBN6	Gp14 family protein	NA
UHGV-1433077_15	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1433077_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1433077_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1433077_16	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1433077_16	eggNOG-mapper	1284679.HMPREF1626_03570	NA	NA
UHGV-1433077_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1433077_18	UniRef90	UniRef90_UPI001E419B4C	phage major capsid protein	NA
UHGV-1433077_18	eggNOG-mapper	1155718.KB891925_gene2428	Phage capsid family	NA
UHGV-1433077_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1433077_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1433077_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1433077_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1433077_19	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1433077_19	UniRef90	UniRef90_UPI001364BA64	Gp19/Gp15/Gp42 family protein	NA
UHGV-1433077_19	eggNOG-mapper	68170.KL590469_gene1552	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1433077_19	Pfam	PF09355	NA	Phage_Gp19
UHGV-1433077_19	Structural annotation	PF09355	NA	NA
UHGV-1433077_20	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1433077_21	Pfam	PF17395	NA	DUF5403
UHGV-1433077_21	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1433077_22	Structural annotation	PF16807	NA	NA
UHGV-1433077_23	PHROG	phrog_117	major tail protein	tail
UHGV-1433077_23	UniRef90	UniRef90_UPI001E4900BB	Ig-like domain-containing protein	NA
UHGV-1433077_23	eggNOG-mapper	1206735.BAGG01000066_gene2880	ig-like, plexins, transcription factors	NA
UHGV-1433077_23	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-1433077_23	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1433077_23	Structural annotation	PF01833, PF04630, TIGR01603, COG3353, COG5437	NA	NA
UHGV-1433077_25	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1433077_25	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1433077_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1433077_26	eggNOG-mapper	1205910.B005_2761	NA	NA
UHGV-1433077_26	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1433077_27	UniRef90	UniRef90_A0A2G1PH73	Fibronectin type-III domain-containing protein	NA
UHGV-1433077_27	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-1433077_27	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1433077_27	COG	COG4372	NA	NA
UHGV-1433077_27	Structural annotation	PF14594, PF00041, NF033848, COG3500, COG5456	NA	NA
UHGV-1433077_28	PHROG	phrog_8469	tail fiber protein	tail
UHGV-1433077_28	UniRef90	UniRef90_UPI001782CC3E	tail fiber protein	NA
UHGV-1433077_28	eggNOG-mapper	378806.STAUR_8203	Phage Tail Collar	NA
UHGV-1433077_28	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1433077_28	COG	COG4675	Phage tail collar domain	NA
UHGV-1433077_28	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1433077_29	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-1433077_29	Structural annotation	PF07902, PF14400, NF012201	NA	NA
UHGV-1433077_31	KOfam	K07273	acm; lysozyme	NA
UHGV-1433077_31	PHROG	phrog_291	endolysin	lysis
UHGV-1433077_31	UniRef90	UniRef90_U1RWY8	Glycosyl hydrolase family 25	NA
UHGV-1433077_31	eggNOG-mapper	203123.OEOE_0206	lysozyme activity	NA
UHGV-1433077_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1433077_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1433077_31	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1433077_33	PHROG	phrog_443	holin	lysis
UHGV-1433077_33	UniRef90	UniRef90_A0A7T0PDU3	Holin	NA
UHGV-1433077_33	eggNOG-mapper	1449069.JMLO01000006_gene972	Putative lactococcus lactis phage r1t holin	NA
UHGV-1433077_33	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1433077_33	Structural annotation	PF16945	NA	NA
UHGV-1433077_34	PHROG	phrog_15808	NA	unknown function
UHGV-1433077_34	eggNOG-mapper	1120944.JONS01000016_gene1223	NA	NA
UHGV-1433077_35	Structural annotation	PF13620, TIGR02423	NA	NA
UHGV-1433077_36	UniRef90	UniRef90_UPI001C485526	spherulation-specific family 4 protein	NA
UHGV-1433077_36	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1433077_36	Structural annotation	PF12138, MF_00418, NF006945, COG0329	NA	NA
UHGV-1433077_37	Structural annotation	PF03422, NF033675	NA	NA
UHGV-1433077_38	Structural annotation	NF033675	NA	NA
UHGV-1433077_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1433077_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1433077_44	UniRef90	UniRef90_UPI001555899C	single-stranded DNA-binding protein	NA
UHGV-1433077_44	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1433077_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1433077_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1433077_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1433077_44	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1433077_45	UniRef90	UniRef90_UPI001C2DC3B4	helix-turn-helix domain-containing protein	NA
UHGV-1433077_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1433077_45	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1433077_45	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1433077_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1433077_46	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1433077_46	UniRef90	UniRef90_G3M5E8	Holliday junction resolvase	NA
UHGV-1433077_46	eggNOG-mapper	1273125.Rrhod_0728	NA	NA
UHGV-1433077_46	Structural annotation	COG1591	NA	NA
UHGV-1433077_52	Structural annotation	NF033144	NA	NA
UHGV-1433077_53	PHROG	phrog_5168	NA	unknown function
UHGV-1433077_54	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1433077_54	UniRef90	UniRef90_UPI0010BE5E8C	ERF family protein	NA
UHGV-1433077_54	eggNOG-mapper	861047.E0YPJ3_9CAUD	ERF superfamily	NA
UHGV-1433077_54	Pfam	PF04404	ERF superfamily	ERF
UHGV-1433077_54	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA