UHGV-1433103

Genome information

Genome length 40,152 bps

CDS count 53

Completeness 79.85% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-1433103
vOTU ID	vOTU-015826
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0269376
BioSample	SAMEA2338636
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.3
Jumbo phage	No

Genome content
Genome length	40,152 bps
GC content	41.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	85.48%
Average CDS length	649.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1433103_1	UniRef90	UniRef90_A0A1P8JCC9	Modification methylase	NA
UHGV-1433103_1	eggNOG-mapper	1122983.BAJY01000021_gene1186	NA	NA
UHGV-1433103_1	PADLOC	MTase_II_00083	Type II methyltransferase	RM
UHGV-1433103_1	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-1433103_3	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1433103_3	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1433103_3	UniRef90	UniRef90_UPI00156EBD00	phage/plasmid primase, P4 family	NA
UHGV-1433103_3	eggNOG-mapper	1463854.JOHT01000021_gene3516	Poxvirus D5 protein-like	NA
UHGV-1433103_3	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1433103_3	Pfam	PF19263	NA	DUF5906
UHGV-1433103_3	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1433103_3	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1433103_3	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1433103_3	Structural annotation	PF05272, PF03288, PF08706, TIGR01613, COG3378	NA	NA
UHGV-1433103_4	UniRef90	UniRef90_A0A1E3U7J6	HTH cro/C1-type domain-containing protein	NA
UHGV-1433103_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1433103_4	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1433103_5	UniRef90	UniRef90_A0A1E3U7J6	HTH cro/C1-type domain-containing protein	NA
UHGV-1433103_5	eggNOG-mapper	1121289.JHVL01000006_gene2897	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1433103_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1433103_5	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-1433103_6	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1433103_6	PHROG	phrog_20388	endolysin	lysis
UHGV-1433103_6	UniRef90	UniRef90_A0A416CLV5	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-1433103_6	eggNOG-mapper	658655.HMPREF0988_00104	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433103_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1433103_6	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1433103_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433103_6	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-1433103_8	PHROG	phrog_1233	NA	unknown function
UHGV-1433103_8	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1433103_8	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-1433103_8	Structural annotation	PF13058	NA	NA
UHGV-1433103_9	Structural annotation	PF15188	NA	NA
UHGV-1433103_13	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1433103_13	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1433103_13	UniRef90	UniRef90_A8V536	DNA polymerase III alpha subunit (Fragment)	NA
UHGV-1433103_13	eggNOG-mapper	1401067.HMPREF0872_07245	DNA-directed DNA polymerase activity	NA
UHGV-1433103_13	Pfam	PF02811	PHP domain	PHP
UHGV-1433103_13	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1433103_14	Structural annotation	PF00210, MF_01441, TIGR00754, COG2193	NA	NA
UHGV-1433103_15	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-1433103_16	PHROG	phrog_16490	NA	unknown function
UHGV-1433103_16	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-1433103_16	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1433103_18	PHROG	phrog_21718	NA	unknown function
UHGV-1433103_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1433103_19	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-1433103_21	PHROG	phrog_538	minor tail protein	tail
UHGV-1433103_21	UniRef90	UniRef90_UPI001C0F168D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1433103_21	eggNOG-mapper	1033737.CAEV01000028_gene284	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1433103_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1433103_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1433103_22	UniRef90	UniRef90_A0A2T0B3T3	Phage tail protein	NA
UHGV-1433103_22	eggNOG-mapper	931626.Awo_c30940	Phage tail protein	NA
UHGV-1433103_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1433103_22	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1433103_23	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1433103_23	UniRef90	UniRef90_UPI0003B2F533	phage tail tape measure protein	NA
UHGV-1433103_23	eggNOG-mapper	665956.HMPREF1032_02256	Phage tail tape measure protein, TP901 family	NA
UHGV-1433103_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1433103_23	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1433103_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1433103_23	COG	COG5283	Phage-related tail protein	NA
UHGV-1433103_23	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1433103_24	PHROG	phrog_6541	NA	unknown function
UHGV-1433103_24	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-1433103_25	PHROG	phrog_6280	NA	unknown function
UHGV-1433103_25	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-1433103_25	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-1433103_26	PHROG	phrog_6686	tail tube protein	tail
UHGV-1433103_26	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1433103_26	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-1433103_26	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1433103_27	PHROG	phrog_7585	NA	unknown function
UHGV-1433103_27	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-1433103_27	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1433103_28	eggNOG-mapper	1304880.JAGB01000002_gene2213	NA	NA
UHGV-1433103_28	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1433103_29	PHROG	phrog_8435	NA	unknown function
UHGV-1433103_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1433103_30	PHROG	phrog_4020	NA	unknown function
UHGV-1433103_30	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-1433103_32	PHROG	phrog_29	major head protein	head and packaging
UHGV-1433103_32	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1433103_32	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1433103_32	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1433103_32	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1433103_33	PHROG	phrog_909	major head protein	head and packaging
UHGV-1433103_33	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-1433103_33	Structural annotation	PF02924	NA	NA
UHGV-1433103_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1433103_34	Structural annotation	MF_02110	NA	NA
UHGV-1433103_35	PHROG	phrog_1315	NA	unknown function
UHGV-1433103_37	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1433103_37	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-1433103_37	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-1433103_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1433103_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-1433103_38	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-1433103_38	eggNOG-mapper	871584.D9ZNC8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1433103_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1433103_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1433103_39	PHROG	phrog_1129	holin	lysis
UHGV-1433103_39	UniRef90	UniRef90_UPI00156E9657	phage holin family protein	NA
UHGV-1433103_39	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1433103_39	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1433103_39	Structural annotation	PF16079	NA	NA
UHGV-1433103_40	PHROG	phrog_4105	NA	unknown function
UHGV-1433103_40	eggNOG-mapper	97139.C824_05951	NA	NA
UHGV-1433103_44	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1433103_45	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-1433103_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1433103_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1433103_46	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-1433103_46	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-1433103_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1433103_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1433103_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1433103_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-1433103_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1433103_47	PHROG	phrog_2412	NA	unknown function
UHGV-1433103_50	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1433103_50	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-1433103_50	UniRef90	UniRef90_UPI0019570FFD	N-6 DNA methylase	NA
UHGV-1433103_50	eggNOG-mapper	1401067.HMPREF0872_03510	type I restriction-modification system	NA
UHGV-1433103_50	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-1433103_50	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1433103_50	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1433103_50	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-1433103_52	UniRef90	UniRef90_UPI001D0F3673	adenine-specific methyltransferase EcoRI family protein	NA
UHGV-1433103_52	eggNOG-mapper	1541960.KQ78_02268	Adenine-specific methyltransferase EcoRI	NA
UHGV-1433103_52	PADLOC	MTase_II_00083	Type II methyltransferase	RM
UHGV-1433103_52	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-1433103_52	Structural annotation	PF13651, MF_00607, NF000468	NA	NA
UHGV-1433103_53	UniRef90	UniRef90_UPI001D0F3673	adenine-specific methyltransferase EcoRI family protein	NA
UHGV-1433103_53	eggNOG-mapper	888727.HMPREF9092_0659	Adenine-specific methyltransferase EcoRI	NA
UHGV-1433103_53	PADLOC	MTase_II_00083	Type II methyltransferase	RM
UHGV-1433103_53	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-1433103_53	Structural annotation	PF13651, MF_00607, NF000468	NA	NA