UHGV-1433275

Genome information

Genome length 40,081 bps

CDS count 56

Completeness 94.25% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-1433275
vOTU ID	vOTU-067206
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0268988
BioSample	SAMN06111942
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.35
Jumbo phage	No

Genome content
Genome length	40,081 bps
GC content	34.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.95%
Average CDS length	654.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1433275_2	KOfam	K14059	int; integrase	NA
UHGV-1433275_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1433275_2	UniRef90	UniRef90_UPI0019585FBF	site-specific integrase	NA
UHGV-1433275_2	eggNOG-mapper	864563.HMPREF9166_1293	Belongs to the 'phage' integrase family	NA
UHGV-1433275_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1433275_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1433275_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1433275_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1433275_3	eggNOG-mapper	568816.Acin_1213	NA	NA
UHGV-1433275_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1433275_6	PHROG	phrog_435	endolysin	lysis
UHGV-1433275_6	UniRef90	UniRef90_H3K6Q0	MurNAc-LAA domain-containing protein	NA
UHGV-1433275_6	eggNOG-mapper	591001.Acfer_1125	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433275_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1433275_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433275_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1433275_7	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-1433275_9	KOfam	K14059	int; integrase	NA
UHGV-1433275_9	PHROG	phrog_1	integrase	integration and excision
UHGV-1433275_9	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-1433275_9	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-1433275_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1433275_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1433275_9	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1433275_11	eggNOG-mapper	1123250.KB908441_gene1623	NA	NA
UHGV-1433275_12	PHROG	phrog_18608	NA	unknown function
UHGV-1433275_12	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-1433275_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1433275_12	Structural annotation	PF18463, NF012201	NA	NA
UHGV-1433275_13	eggNOG-mapper	1122925.KB895384_gene3124	Phage tail-collar fibre protein	NA
UHGV-1433275_13	Structural annotation	PF12571	NA	NA
UHGV-1433275_14	PHROG	phrog_521	tail protein	tail
UHGV-1433275_14	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-1433275_14	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-1433275_14	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1433275_14	COG	COG3778	NA	NA
UHGV-1433275_14	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1433275_15	PHROG	phrog_6	baseplate protein	tail
UHGV-1433275_15	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-1433275_15	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-1433275_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1433275_15	COG	COG3299	NA	NA
UHGV-1433275_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1433275_16	PHROG	phrog_120	baseplate protein	tail
UHGV-1433275_16	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-1433275_16	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-1433275_16	Pfam	PF10934	NA	DUF2634
UHGV-1433275_16	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1433275_17	PHROG	phrog_579	NA	unknown function
UHGV-1433275_17	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-1433275_17	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-1433275_17	Pfam	PF10844	NA	DUF2577
UHGV-1433275_17	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-1433275_18	PHROG	phrog_400	tail protein	tail
UHGV-1433275_18	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-1433275_18	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-1433275_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1433275_18	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1433275_19	PHROG	phrog_380	endolysin	lysis
UHGV-1433275_19	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1433275_19	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-1433275_19	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1433275_19	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-1433275_20	PHROG	phrog_16692	NA	unknown function
UHGV-1433275_20	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1433275_20	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-1433275_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1433275_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1433275_20	COG	COG5283	Phage-related tail protein	NA
UHGV-1433275_20	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1433275_21	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-1433275_21	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-1433275_21	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1433275_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1433275_21	Structural annotation	PF08890	NA	NA
UHGV-1433275_22	PHROG	phrog_365	tail protein	tail
UHGV-1433275_22	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-1433275_22	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-1433275_22	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1433275_22	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1433275_23	PHROG	phrog_1480	tail sheath	tail
UHGV-1433275_23	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-1433275_23	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-1433275_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1433275_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1433275_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1433275_24	PHROG	phrog_525	NA	unknown function
UHGV-1433275_24	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-1433275_24	Pfam	PF20765	NA	DUF6838
UHGV-1433275_24	Structural annotation	PF20765	NA	NA
UHGV-1433275_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1433275_25	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1433275_25	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1433275_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1433275_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1433275_26	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1433275_26	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-1433275_26	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1433275_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1433275_27	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-1433275_29	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1433275_29	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-1433275_29	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-1433275_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1433275_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1433275_29	COG	COG2369	NA	NA
UHGV-1433275_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1433275_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-1433275_30	UniRef90	UniRef90_UPI001CD50515	major capsid protein	NA
UHGV-1433275_30	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-1433275_30	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1433275_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1433275_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1433275_31	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-1433275_31	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-1433275_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1433275_31	Structural annotation	PF06810	NA	NA
UHGV-1433275_32	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1433275_32	PHROG	phrog_819	tail protein	tail
UHGV-1433275_32	UniRef90	UniRef90_UPI001430CFAD	collagen-like protein	NA
UHGV-1433275_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1433275_32	COG	COG5295	Autotransporter adhesin	NA
UHGV-1433275_33	PHROG	phrog_29127	NA	unknown function
UHGV-1433275_33	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-1433275_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-1433275_34	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-1433275_34	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1433275_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1433275_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1433275_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1433275_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1433275_35	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-1433275_35	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1433275_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1433275_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1433275_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1433275_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1433275_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1433275_36	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1433275_36	UniRef90	UniRef90_UPI0015F333B0	phage terminase small subunit	NA
UHGV-1433275_36	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-1433275_36	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1433275_36	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1433275_36	COG	COG5484	NA	NA
UHGV-1433275_36	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-1433275_37	eggNOG-mapper	411469.EUBHAL_02905	NA	NA
UHGV-1433275_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1433275_38	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-1433275_38	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1433275_42	UniRef90	UniRef90_UPI001D0851CD	helix-turn-helix domain-containing protein	NA
UHGV-1433275_42	eggNOG-mapper	1089548.KI783301_gene2628	NA	NA
UHGV-1433275_43	eggNOG-mapper	272562.CA_C1147	NA	NA
UHGV-1433275_45	UniRef90	UniRef90_I0GS13	Putative RusA family protein	NA
UHGV-1433275_45	eggNOG-mapper	1280706.AUJE01000003_gene2276	Endodeoxyribonuclease RusA	NA
UHGV-1433275_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1433275_47	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1433275_47	UniRef90	UniRef90_H3K6U8	NA	NA
UHGV-1433275_47	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-1433275_47	Pfam	PF12961	NA	DUF3850
UHGV-1433275_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1433275_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1433275_51	UniRef90	UniRef90_H3K6V2	IstB_IS21 domain-containing protein	NA
UHGV-1433275_51	eggNOG-mapper	1280706.AUJE01000003_gene2277	DNA-dependent DNA replication	NA
UHGV-1433275_51	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1433275_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1433275_51	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-1433275_52	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1433275_52	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1433275_52	UniRef90	UniRef90_H3K6V3	DnaD and phage-associated domain-containing protein	NA
UHGV-1433275_52	eggNOG-mapper	936573.HMPREF1147_1306	DnaD domain protein	NA
UHGV-1433275_52	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1433275_52	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1433275_52	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1433275_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1433275_52	Structural annotation	PF01978, PF07261, MF_01819, TIGR04176, COG3935	NA	NA
UHGV-1433275_54	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1433275_54	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1433275_54	UniRef90	UniRef90_H3K6V6	Lactamase_B domain-containing protein	NA
UHGV-1433275_54	eggNOG-mapper	1121342.AUCO01000012_gene1721	Metallo-beta-lactamase superfamily	NA
UHGV-1433275_54	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1433275_54	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1433275_54	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1433275_55	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1433275_55	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-1433275_55	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-1433275_55	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1433275_56	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1433275_56	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1433275_56	UniRef90	UniRef90_H3K6V8	AAA_23 domain-containing protein	NA
UHGV-1433275_56	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-1433275_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1433275_56	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA