UHGV-1433303

Genome information

Genome length 40,159 bps

CDS count 57

Completeness 80.57% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1433303
vOTU ID	vOTU-025211
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0269411
BioSample	SAMEA2580140
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.18
Jumbo phage	No

Genome content
Genome length	40,159 bps
GC content	38.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.63%
Average CDS length	635.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1433303_1	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-1433303_1	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-1433303_1	UniRef90	UniRef90_A0A1W1UZM7	AAA domain (Dynein-related subfamily)	NA
UHGV-1433303_1	eggNOG-mapper	330395.Q30L55_9CAUD	ATPase activity	NA
UHGV-1433303_1	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-1433303_1	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-1433303_2	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1433303_2	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1433303_3	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-1433303_6	Structural annotation	PF10922	NA	NA
UHGV-1433303_7	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1433303_7	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1433303_7	UniRef90	UniRef90_A0A354UPB2	Ribonuclease H	NA
UHGV-1433303_7	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1433303_7	Pfam	PF00075	RNase H	RNase_H
UHGV-1433303_7	COG	COG0328	Ribonuclease HI	NA
UHGV-1433303_7	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1433303_9	PHROG	phrog_2412	NA	unknown function
UHGV-1433303_11	PHROG	phrog_16126	NA	unknown function
UHGV-1433303_11	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-1433303_14	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1433303_14	UniRef90	UniRef90_A0A4D6A7C4	DNA modification methylase	NA
UHGV-1433303_14	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-1433303_14	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1433303_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1433303_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1433303_14	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1433303_15	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1433303_15	eggNOG-mapper	1236514.BAKL01000015_gene1638	NA	NA
UHGV-1433303_15	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1433303_15	Structural annotation	PF20691, MF_00057, NF038299, COG1216	NA	NA
UHGV-1433303_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1433303_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1433303_16	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-1433303_16	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-1433303_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1433303_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1433303_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1433303_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-1433303_16	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1433303_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1433303_17	UniRef90	UniRef90_L1Q7G2	HNH endonuclease domain protein	NA
UHGV-1433303_17	eggNOG-mapper	545697.HMPREF0216_02843	NUMOD4 motif	NA
UHGV-1433303_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1433303_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1433303_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1433303_18	PHROG	phrog_6672	terminase large subunit	head and packaging
UHGV-1433303_18	UniRef90	UniRef90_UPI00037FF8DD	PBSX family phage terminase large subunit	NA
UHGV-1433303_18	eggNOG-mapper	1121342.AUCO01000012_gene1701	Phage terminase, large subunit, PBSX family	NA
UHGV-1433303_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1433303_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1433303_21	PHROG	phrog_443	holin	lysis
UHGV-1433303_21	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-1433303_21	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-1433303_21	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1433303_21	Structural annotation	PF16945	NA	NA
UHGV-1433303_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1433303_22	PHROG	phrog_7854	endolysin	lysis
UHGV-1433303_22	UniRef90	UniRef90_UPI000C77F229	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433303_22	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433303_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1433303_22	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-1433303_22	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1433303_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1433303_22	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-1433303_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-1433303_23	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-1433303_23	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1433303_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1433303_24	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1433303_24	UniRef90	UniRef90_UPI001D0FF452	ADP-ribosyltransferase	NA
UHGV-1433303_24	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-1433303_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1433303_27	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-1433303_27	Structural annotation	MF_02110	NA	NA
UHGV-1433303_28	PHROG	phrog_909	major head protein	head and packaging
UHGV-1433303_28	Structural annotation	PF02924	NA	NA
UHGV-1433303_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-1433303_29	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1433303_29	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1433303_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1433303_29	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1433303_30	Structural annotation	PF07498	NA	NA
UHGV-1433303_31	PHROG	phrog_4020	NA	unknown function
UHGV-1433303_31	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-1433303_32	PHROG	phrog_8435	NA	unknown function
UHGV-1433303_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1433303_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1433303_33	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-1433303_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1433303_33	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1433303_34	PHROG	phrog_7585	NA	unknown function
UHGV-1433303_34	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-1433303_34	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1433303_35	PHROG	phrog_6686	tail tube protein	tail
UHGV-1433303_35	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1433303_35	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-1433303_35	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1433303_36	PHROG	phrog_6280	NA	unknown function
UHGV-1433303_36	UniRef90	UniRef90_UPI001AA892DF	esterase	NA
UHGV-1433303_36	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-1433303_37	PHROG	phrog_6541	NA	unknown function
UHGV-1433303_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1433303_38	UniRef90	UniRef90_UPI0003B2F533	phage tail tape measure protein	NA
UHGV-1433303_38	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-1433303_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1433303_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1433303_38	COG	COG5283	Phage-related tail protein	NA
UHGV-1433303_38	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1433303_39	PHROG	phrog_36410	NA	unknown function
UHGV-1433303_39	UniRef90	UniRef90_UPI00189A2D41	phage tail family protein	NA
UHGV-1433303_39	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-1433303_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-1433303_39	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1433303_40	PHROG	phrog_538	minor tail protein	tail
UHGV-1433303_40	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1433303_40	eggNOG-mapper	1034347.CAHJ01000045_gene552	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1433303_40	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1433303_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1433303_41	PHROG	phrog_1220	head protein	head and packaging
UHGV-1433303_41	UniRef90	UniRef90_UPI0005821E94	methyl-accepting chemotaxis protein	NA
UHGV-1433303_41	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-1433303_41	Structural annotation	PF20747	NA	NA
UHGV-1433303_46	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-1433303_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1433303_48	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1433303_48	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-1433303_48	eggNOG-mapper	1005057.BUAMB_052	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1433303_48	PADLOC	drt-UG29	DRT	DRT
UHGV-1433303_48	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1433303_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1433303_48	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1433303_48	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1433303_50	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1433303_50	Structural annotation	PF08804	NA	NA
UHGV-1433303_51	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1433303_51	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1433303_51	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-1433303_51	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1433303_51	Pfam	PF02811	PHP domain	PHP
UHGV-1433303_51	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1433303_51	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1433303_51	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1433303_51	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1433303_51	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1433303_51	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-1433303_53	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-1433303_53	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-1433303_53	UniRef90	UniRef90_A0A1F4XI68	Protein RecA	NA
UHGV-1433303_53	eggNOG-mapper	469616.FMAG_01147	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-1433303_53	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-1433303_53	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1433303_53	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-1433303_54	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-1433303_54	UniRef90	UniRef90_A0A5D3IBF8	PDDEXK_1 domain-containing protein	NA
UHGV-1433303_54	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-1433303_54	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-1433303_55	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1433303_55	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1433303_57	PHROG	phrog_1909	NA	unknown function
UHGV-1433303_57	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA