UHGV-1434486

Genome information

Genome length 37,800 bps

CDS count 55

Completeness 87.89% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434486
vOTU ID	vOTU-018713
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0256214
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.38
Jumbo phage	No

Genome content
Genome length	37,800 bps
GC content	48.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.85%
Average CDS length	622.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434486_1	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1434486_1	UniRef90	UniRef90_UPI000BFD901B	replication protein	NA
UHGV-1434486_1	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1434486_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1434486_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1434486_3	UniRef90	UniRef90_A0A2A6RF81	Single-stranded DNA-binding protein	NA
UHGV-1434486_3	eggNOG-mapper	326427.Cagg_2703	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1434486_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1434486_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1434486_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1434486_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1434486_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1434486_4	PHROG	phrog_4973	NA	unknown function
UHGV-1434486_4	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1434486_5	PHROG	phrog_14970	NA	unknown function
UHGV-1434486_5	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-1434486_5	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1434486_5	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1434486_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1434486_6	UniRef90	UniRef90_UPI000C7CF4DA	siphovirus Gp157 family protein	NA
UHGV-1434486_6	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1434486_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1434486_6	Structural annotation	PF05565	NA	NA
UHGV-1434486_8	PHROG	phrog_16490	NA	unknown function
UHGV-1434486_8	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1434486_9	PHROG	phrog_21718	NA	unknown function
UHGV-1434486_10	PHROG	phrog_443	holin	lysis
UHGV-1434486_10	UniRef90	UniRef90_UPI0008F89B51	holin	NA
UHGV-1434486_10	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-1434486_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1434486_10	Structural annotation	PF16945	NA	NA
UHGV-1434486_11	PHROG	phrog_1863	NA	unknown function
UHGV-1434486_11	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-1434486_12	UniRef90	UniRef90_R6AVY2	Cell wall-associated hydrolase invasion-associated protein	NA
UHGV-1434486_12	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-1434486_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1434486_12	Structural annotation	NF033743, COG0791	NA	NA
UHGV-1434486_16	PHROG	phrog_6616	tail protein	tail
UHGV-1434486_16	eggNOG-mapper	445972.ANACOL_01865	NA	NA
UHGV-1434486_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1434486_18	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1434486_18	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1434486_20	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1434486_20	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-1434486_20	Pfam	PF16478	NA	DUF5055
UHGV-1434486_20	Structural annotation	PF16478	NA	NA
UHGV-1434486_21	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-1434486_21	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1434486_22	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1434486_24	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1434486_25	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1434486_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1434486_25	Structural annotation	TIGR01560	NA	NA
UHGV-1434486_26	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1434486_26	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-1434486_26	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-1434486_26	Pfam	PF17236	NA	DUF5309
UHGV-1434486_26	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-1434486_27	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-1434486_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1434486_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1434486_28	COG	COG2369	NA	NA
UHGV-1434486_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1434486_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1434486_29	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-1434486_29	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1434486_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1434486_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1434486_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1434486_30	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-1434486_30	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-1434486_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1434486_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1434486_30	COG	COG5410	NA	NA
UHGV-1434486_30	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1434486_34	Structural annotation	PF16677	NA	NA
UHGV-1434486_35	Structural annotation	PF13744, TIGR03070, COG1396	NA	NA
UHGV-1434486_36	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1434486_36	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1434486_36	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-1434486_36	eggNOG-mapper	1291050.JAGE01000001_gene2060	Phage plasmid primase, P4 family	NA
UHGV-1434486_36	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1434486_36	Pfam	PF19263	NA	DUF5906
UHGV-1434486_36	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1434486_36	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1434486_36	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1434486_36	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1434486_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1434486_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1434486_37	UniRef90	UniRef90_A0A1G5EU37	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1434486_37	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1434486_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1434486_37	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1434486_39	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1434486_39	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1434486_39	UniRef90	UniRef90_UPI0011069ADC	FAD-dependent thymidylate synthase	NA
UHGV-1434486_39	eggNOG-mapper	509191.AEDB02000067_gene837	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1434486_39	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1434486_39	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1434486_39	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1434486_39	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1434486_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1434486_42	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1434486_42	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-1434486_42	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-1434486_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1434486_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1434486_42	COG	COG3617	Prophage antirepressor	NA
UHGV-1434486_42	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1434486_48	Structural annotation	PF16533, COG5420	NA	NA
UHGV-1434486_50	PHROG	phrog_18716	NA	unknown function
UHGV-1434486_50	UniRef90	UniRef90_A0A372V803	NA	NA
UHGV-1434486_50	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-1434486_50	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1434486_51	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434486_51	UniRef90	UniRef90_UPI0005CACF1F	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-1434486_51	eggNOG-mapper	379329.Q08J32_9CAUD	HNH endonuclease	NA
UHGV-1434486_51	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1434486_52	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434486_52	UniRef90	UniRef90_UPI000853A731	NUMOD4 domain-containing protein	NA
UHGV-1434486_52	eggNOG-mapper	1208587.S6CQN3_9CAUD	HNH endonuclease	NA
UHGV-1434486_52	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1434486_52	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1434486_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1434486_53	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1434486_53	UniRef90	UniRef90_A0A843H433	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1434486_53	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-1434486_53	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1434486_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1434486_53	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1434486_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1434486_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1434486_54	UniRef90	UniRef90_A0A410PX27	IstB_IS21 domain-containing protein	NA
UHGV-1434486_54	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-1434486_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1434486_54	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1434486_55	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-1434486_55	COG	COG3935	DNA replication protein DnaD	NA