UHGV-1434547

Genome information

vOTU vOTU-020238

Genome length 51,390 bps

CDS count 85

Completeness 87.16% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434547
vOTU ID	vOTU-020238
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0313832
BioSample	SAMN00146029
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.71
Jumbo phage	No

Genome content
Genome length	51,390 bps
GC content	38.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	88.59%
Average CDS length	538.06 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434547_1	KOfam	K14059	int; integrase	NA
UHGV-1434547_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1434547_1	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-1434547_1	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-1434547_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1434547_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1434547_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1434547_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1434547_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1434547_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1434547_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-1434547_2	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-1434547_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1434547_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1434547_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1434547_2	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-1434547_3	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-1434547_4	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1434547_4	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-1434547_4	AcrCatalog	cluster_47493	NA	NA
UHGV-1434547_4	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-1434547_7	PHROG	phrog_10714	NA	unknown function
UHGV-1434547_9	Structural annotation	COG4446	NA	NA
UHGV-1434547_10	UniRef90	UniRef90_UPI001D0694DF	NA	NA
UHGV-1434547_10	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-1434547_11	PHROG	phrog_21026	NA	unknown function
UHGV-1434547_16	PHROG	phrog_9804	NA	unknown function
UHGV-1434547_16	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-1434547_16	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-1434547_16	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1434547_16	Structural annotation	PF11417	NA	NA
UHGV-1434547_17	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1434547_17	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-1434547_17	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-1434547_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1434547_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1434547_18	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1434547_18	UniRef90	UniRef90_A0A356C4U7	Replisome organizer	NA
UHGV-1434547_18	eggNOG-mapper	632245.CLP_2716	DnaD domain protein	NA
UHGV-1434547_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1434547_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1434547_18	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1434547_19	Structural annotation	PF17388	NA	NA
UHGV-1434547_20	PHROG	phrog_3458	NA	unknown function
UHGV-1434547_21	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434547_21	UniRef90	UniRef90_A0A173Z8S3	NUMOD4 motif	NA
UHGV-1434547_21	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-1434547_21	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1434547_21	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1434547_21	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1434547_22	PHROG	phrog_19106	NA	unknown function
UHGV-1434547_22	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-1434547_22	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1434547_22	Structural annotation	TIGR01453	NA	NA
UHGV-1434547_23	Structural annotation	PF00041	NA	NA
UHGV-1434547_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1434547_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1434547_25	UniRef90	UniRef90_A0A1I6JG45	Single-stranded DNA-binding protein	NA
UHGV-1434547_25	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1434547_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1434547_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1434547_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1434547_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1434547_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1434547_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1434547_27	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1434547_27	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1434547_27	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1434547_27	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-1434547_28	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1434547_28	UniRef90	UniRef90_A0A416JIG7	MBL fold metallo-hydrolase	NA
UHGV-1434547_28	eggNOG-mapper	443254.Marpi_0302	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1434547_28	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1434547_29	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434547_29	UniRef90	UniRef90_C0CR26	HNHc domain-containing protein	NA
UHGV-1434547_29	eggNOG-mapper	1500386.A0A060AFF3_9CAUD	HNH endonuclease	NA
UHGV-1434547_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1434547_29	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1434547_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1434547_29	Structural annotation	PF13392, PF07463	NA	NA
UHGV-1434547_30	PHROG	phrog_25456	NA	unknown function
UHGV-1434547_31	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1434547_31	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-1434547_31	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-1434547_31	Pfam	PF03837	RecT family	RecT
UHGV-1434547_31	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1434547_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1434547_31	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1434547_34	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1434547_34	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434547_34	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-1434547_34	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-1434547_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1434547_34	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1434547_37	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-1434547_37	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1434547_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1434547_38	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-1434547_38	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-1434547_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1434547_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1434547_38	COG	COG3617	Prophage antirepressor	NA
UHGV-1434547_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1434547_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434547_39	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-1434547_39	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-1434547_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1434547_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1434547_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1434547_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1434547_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434547_40	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-1434547_40	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-1434547_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434547_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1434547_40	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1434547_41	PHROG	phrog_3845	NA	unknown function
UHGV-1434547_41	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-1434547_43	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-1434547_44	UniRef90	UniRef90_A0A7X5CHF3	Peptide chain release factor 2	NA
UHGV-1434547_45	PHROG	phrog_6616	tail protein	tail
UHGV-1434547_45	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-1434547_45	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-1434547_45	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1434547_46	PHROG	phrog_1194	NA	unknown function
UHGV-1434547_46	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-1434547_46	Pfam	PF20458	NA	DUF6711
UHGV-1434547_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1434547_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1434547_47	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1434547_47	COG	COG1511	NA	NA
UHGV-1434547_48	KOfam	K07273	acm; lysozyme	NA
UHGV-1434547_48	PHROG	phrog_291	endolysin	lysis
UHGV-1434547_48	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-1434547_48	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-1434547_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1434547_48	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1434547_48	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-1434547_51	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1434547_51	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1434547_52	Structural annotation	PF05657	NA	NA
UHGV-1434547_53	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-1434547_53	AcrCatalog	cluster_24841	NA	NA
UHGV-1434547_54	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1434547_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1434547_55	PHROG	phrog_1129	holin	lysis
UHGV-1434547_55	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-1434547_55	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1434547_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1434547_55	Structural annotation	PF06946	NA	NA
UHGV-1434547_56	PHROG	phrog_1863	NA	unknown function
UHGV-1434547_57	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1434547_58	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-1434547_58	Structural annotation	PF21169	NA	NA
UHGV-1434547_59	PHROG	phrog_29	major head protein	head and packaging
UHGV-1434547_59	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-1434547_59	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-1434547_59	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1434547_59	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1434547_60	PHROG	phrog_909	major head protein	head and packaging
UHGV-1434547_60	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-1434547_60	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-1434547_61	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-1434547_64	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1434547_64	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-1434547_64	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-1434547_64	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1434547_64	COG	COG2369	NA	NA
UHGV-1434547_64	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1434547_65	PHROG	phrog_64	portal protein	head and packaging
UHGV-1434547_65	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-1434547_65	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1434547_65	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1434547_65	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1434547_66	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1434547_66	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1434547_66	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-1434547_66	Pfam	PF07374	NA	DUF1492
UHGV-1434547_66	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1434547_66	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1434547_67	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1434547_67	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-1434547_67	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-1434547_67	COG	COG5410	NA	NA
UHGV-1434547_67	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1434547_68	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1434547_68	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-1434547_68	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1434547_69	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-1434547_69	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-1434547_69	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-1434547_69	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-1434547_69	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-1434547_69	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-1434547_69	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-1434547_73	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1434547_74	Structural annotation	PF04466	NA	NA
UHGV-1434547_79	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1434547_79	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1434547_80	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1434547_80	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-1434547_82	PHROG	phrog_236	nucleotide kinase	other
UHGV-1434547_82	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-1434547_82	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-1434547_82	Pfam	PF11753	NA	DUF3310
UHGV-1434547_82	Structural annotation	PF11753	NA	NA
UHGV-1434547_83	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1434547_84	PHROG	phrog_13890	NA	unknown function