UHGV-1434600

Genome information

Genome length 28,957 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434600
vOTU ID	vOTU-079615
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0205462
BioSample	SAMN06110143
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.44
Jumbo phage	No

Genome content
Genome length	28,957 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.76%
Average CDS length	545.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434600_1	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1434600_1	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1434600_1	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1434600_1	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1434600_2	PHROG	phrog_674	NA	unknown function
UHGV-1434600_2	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-1434600_2	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1434600_2	Pfam	PF07083	NA	DUF1351
UHGV-1434600_2	Structural annotation	PF07083	NA	NA
UHGV-1434600_3	Structural annotation	PF04570, COG2075	NA	NA
UHGV-1434600_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1434600_8	PHROG	phrog_2232	NA	unknown function
UHGV-1434600_8	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-1434600_8	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-1434600_8	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1434600_8	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-1434600_10	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-1434600_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1434600_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434600_11	UniRef90	UniRef90_A0A413K864	XRE family transcriptional regulator	NA
UHGV-1434600_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1434600_11	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1434600_12	PHROG	phrog_87	metallo-protease	other
UHGV-1434600_12	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-1434600_12	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-1434600_12	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1434600_12	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1434600_13	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-1434600_14	PHROG	phrog_10292	NA	unknown function
UHGV-1434600_14	UniRef90	UniRef90_A0A413K8M0	TM2 domain-containing protein	NA
UHGV-1434600_14	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-1434600_14	Pfam	PF05154	TM2 domain	TM2
UHGV-1434600_14	COG	COG2314	NA	NA
UHGV-1434600_15	KOfam	K14059	int; integrase	NA
UHGV-1434600_15	PHROG	phrog_1	integrase	integration and excision
UHGV-1434600_15	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-1434600_15	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-1434600_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1434600_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1434600_15	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1434600_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1434600_16	PHROG	phrog_1794	amidase	lysis
UHGV-1434600_16	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-1434600_16	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1434600_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1434600_16	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1434600_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1434600_16	Structural annotation	PF01520, PF18342, NF038140, COG0860, COG4991	NA	NA
UHGV-1434600_17	PHROG	phrog_18591	NA	unknown function
UHGV-1434600_17	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-1434600_18	PHROG	phrog_443	holin	lysis
UHGV-1434600_18	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-1434600_18	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-1434600_18	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1434600_18	Structural annotation	PF16945	NA	NA
UHGV-1434600_19	PHROG	phrog_1863	NA	unknown function
UHGV-1434600_19	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-1434600_19	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1434600_21	PHROG	phrog_5302	tail protein	tail
UHGV-1434600_21	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-1434600_21	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1434600_21	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1434600_21	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1434600_21	Structural annotation	COG1262	NA	NA
UHGV-1434600_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1434600_22	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-1434600_22	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1434600_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1434600_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1434600_22	COG	COG4926	Phage-related protein	NA
UHGV-1434600_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1434600_23	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-1434600_23	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-1434600_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1434600_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1434600_24	PHROG	phrog_23464	NA	unknown function
UHGV-1434600_24	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1434600_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1434600_24	Structural annotation	COG3941	NA	NA
UHGV-1434600_26	PHROG	phrog_1021	NA	unknown function
UHGV-1434600_27	PHROG	phrog_885	major tail protein	tail
UHGV-1434600_27	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-1434600_27	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-1434600_27	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1434600_28	Structural annotation	PF12691	NA	NA
UHGV-1434600_29	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-1434600_29	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-1434600_29	Structural annotation	TIGR01725	NA	NA
UHGV-1434600_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1434600_30	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-1434600_30	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-1434600_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1434600_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1434600_31	PHROG	phrog_5223	neck protein	connector
UHGV-1434600_31	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-1434600_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1434600_31	Structural annotation	TIGR01560	NA	NA
UHGV-1434600_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-1434600_32	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-1434600_32	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1434600_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1434600_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1434600_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1434600_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1434600_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1434600_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1434600_33	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1434600_33	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-1434600_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1434600_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1434600_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1434600_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-1434600_34	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-1434600_34	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1434600_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1434600_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1434600_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1434600_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1434600_35	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-1434600_35	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-1434600_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1434600_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1434600_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1434600_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1434600_36	PHROG	phrog_1066	NA	unknown function
UHGV-1434600_36	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-1434600_36	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-1434600_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1434600_37	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-1434600_37	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1434600_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1434600_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1434600_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434600_41	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-1434600_41	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1434600_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434600_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1434600_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1434600_42	PHROG	phrog_10714	NA	unknown function
UHGV-1434600_42	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-1434600_47	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-1434600_48	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1434600_48	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-1434600_48	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-1434600_48	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1434600_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1434600_48	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1434600_49	PHROG	phrog_16687	NA	unknown function
UHGV-1434600_49	eggNOG-mapper	1123511.KB905868_gene197	NA	NA