UHGV-1434693

Genome information

vOTU vOTU-020640

Genome length 32,117 bps

CDS count 53

Completeness 86.94% (medium-quality)

geNomad score 0.9643

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434693
vOTU ID	vOTU-020640
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0223303
BioSample	SAMEA3664670
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9643
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.93
Jumbo phage	No

Genome content
Genome length	32,117 bps
GC content	26.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.55%
Average CDS length	562.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434693_1	KOfam	K14059	int; integrase	NA
UHGV-1434693_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1434693_1	UniRef90	UniRef90_A0A417BTY9	Site-specific integrase	NA
UHGV-1434693_1	eggNOG-mapper	649747.HMPREF0083_00061	Belongs to the 'phage' integrase family	NA
UHGV-1434693_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1434693_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1434693_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1434693_1	Structural annotation	PF00589, PF14659, PF12167, MF_01807, NF007246, COG4974	NA	NA
UHGV-1434693_2	PHROG	phrog_87	metallo-protease	other
UHGV-1434693_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-1434693_2	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-1434693_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1434693_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1434693_4	PHROG	phrog_2232	NA	unknown function
UHGV-1434693_4	UniRef90	UniRef90_UPI000E7429B7	NA	NA
UHGV-1434693_4	eggNOG-mapper	1069533.Sinf_0891	NA	NA
UHGV-1434693_4	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-1434693_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1434693_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434693_5	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-1434693_5	eggNOG-mapper	1347392.CCEZ01000062_gene683	transcriptional regulator	NA
UHGV-1434693_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1434693_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434693_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1434693_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1434693_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1434693_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434693_6	UniRef90	UniRef90_R7IUI2	DNA-binding helix-turn-helix protein	NA
UHGV-1434693_6	eggNOG-mapper	1292035.H476_1572	Transcriptional	NA
UHGV-1434693_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434693_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1434693_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1434693_9	Structural annotation	PF10922	NA	NA
UHGV-1434693_11	PHROG	phrog_7566	NA	unknown function
UHGV-1434693_11	UniRef90	UniRef90_A0A1V5HS54	HNH domain-containing protein	NA
UHGV-1434693_11	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-1434693_12	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-1434693_12	UniRef90	UniRef90_C4KZV2	Putative septation protein SpoVG	NA
UHGV-1434693_12	eggNOG-mapper	360911.EAT1b_1689	Could be involved in septation	NA
UHGV-1434693_12	Pfam	PF04026	SpoVG	SpoVG
UHGV-1434693_12	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-1434693_12	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-1434693_13	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-1434693_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1434693_13	Structural annotation	PF03444, NF041413, COG5625	NA	NA
UHGV-1434693_14	UniRef90	UniRef90_A0A1Q6M1X1	HTH_11 domain-containing protein	NA
UHGV-1434693_14	Pfam	PF08279	HTH domain	HTH_11
UHGV-1434693_14	Structural annotation	PF21715, TIGR00122	NA	NA
UHGV-1434693_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1434693_27	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-1434693_29	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-1434693_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1434693_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1434693_30	UniRef90	UniRef90_A0A2T3FZ43	PBSX family phage terminase large subunit	NA
UHGV-1434693_30	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-1434693_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1434693_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1434693_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1434693_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1434693_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1434693_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-1434693_31	UniRef90	UniRef90_A0A847YRN2	Phage portal protein (Fragment)	NA
UHGV-1434693_31	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-1434693_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1434693_31	Structural annotation	PF05133, MF_04120, TIGR01542	NA	NA
UHGV-1434693_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-1434693_32	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-1434693_32	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-1434693_32	Structural annotation	PF05133, TIGR01542, COG5511	NA	NA
UHGV-1434693_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1434693_33	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-1434693_33	eggNOG-mapper	1120998.AUFC01000030_gene2233	NA	NA
UHGV-1434693_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1434693_33	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1434693_33	COG	COG2369	NA	NA
UHGV-1434693_33	Structural annotation	PF06152	NA	NA
UHGV-1434693_34	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-1434693_35	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-1434693_35	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1434693_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1434693_36	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1434693_37	PHROG	phrog_3366	NA	unknown function
UHGV-1434693_37	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-1434693_37	Pfam	PF20536	NA	DUF6751
UHGV-1434693_37	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1434693_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1434693_38	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-1434693_38	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-1434693_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1434693_38	Structural annotation	PF11114	NA	NA
UHGV-1434693_39	PHROG	phrog_3266	tail completion	connector
UHGV-1434693_39	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-1434693_39	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-1434693_39	Structural annotation	PF12691	NA	NA
UHGV-1434693_40	PHROG	phrog_3099	NA	unknown function
UHGV-1434693_40	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1434693_40	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-1434693_41	PHROG	phrog_14275	NA	unknown function
UHGV-1434693_41	UniRef90	UniRef90_R6Y193	zinc_ribbon_2 domain-containing protein	NA
UHGV-1434693_41	eggNOG-mapper	1232436.CAPF01000028_gene945	NA	NA
UHGV-1434693_41	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1434693_41	Structural annotation	PF07233, NF038353, COG5633	NA	NA
UHGV-1434693_43	PHROG	phrog_706	NA	unknown function
UHGV-1434693_43	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-1434693_43	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-1434693_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1434693_43	Structural annotation	PF06854	NA	NA
UHGV-1434693_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1434693_44	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-1434693_45	PHROG	phrog_1194	NA	unknown function
UHGV-1434693_45	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-1434693_46	PHROG	phrog_5668	tail fiber protein	tail
UHGV-1434693_46	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-1434693_46	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-1434693_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1434693_46	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-1434693_49	PHROG	phrog_2310	NA	unknown function
UHGV-1434693_49	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-1434693_51	Structural annotation	PF16938	NA	NA
UHGV-1434693_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1434693_53	PHROG	phrog_3088	amidase	lysis
UHGV-1434693_53	UniRef90	UniRef90_R7IU28	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1434693_53	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1434693_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1434693_53	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1434693_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA