UHGV-1434852

Genome information

Genome length 32,095 bps

CDS count 52

Completeness 70.40% (medium-quality)

geNomad score 0.9670

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434852
vOTU ID	vOTU-027345
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0223181
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9670
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.18
Jumbo phage	No

Genome content
Genome length	32,095 bps
GC content	68.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	87.18%
Average CDS length	541.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434852_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1434852_1	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1434852_1	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1434852_1	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-1434852_3	UniRef90	UniRef90_UPI0009316611	NA	NA
UHGV-1434852_3	Pfam	PF16478	NA	DUF5055
UHGV-1434852_3	Structural annotation	PF16478	NA	NA
UHGV-1434852_4	PHROG	phrog_158	major tail protein	tail
UHGV-1434852_4	UniRef90	UniRef90_UPI001106E87B	phage tail protein	NA
UHGV-1434852_4	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-1434852_4	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1434852_4	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1434852_5	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1434852_6	UniRef90	UniRef90_UPI001C963648	HK97 gp10 family phage protein	NA
UHGV-1434852_6	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1434852_8	UniRef90	UniRef90_UPI001C9486FC	phage head-tail connector protein	NA
UHGV-1434852_8	Structural annotation	TIGR01560	NA	NA
UHGV-1434852_9	PHROG	phrog_247	major head protein	head and packaging
UHGV-1434852_9	UniRef90	UniRef90_UPI001106BB9B	major capsid protein	NA
UHGV-1434852_9	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-1434852_9	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1434852_10	UniRef90	UniRef90_UPI001C9809E0	NA	NA
UHGV-1434852_10	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1434852_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-1434852_11	UniRef90	UniRef90_UPI001C94E255	phage portal protein	NA
UHGV-1434852_11	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1434852_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1434852_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1434852_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1434852_12	UniRef90	UniRef90_UPI001106681D	phage terminase large subunit	NA
UHGV-1434852_12	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1434852_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1434852_12	COG	COG5410	NA	NA
UHGV-1434852_12	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1434852_13	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1434852_13	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1434852_13	UniRef90	UniRef90_UPI001BB21D57	recombinase family protein	NA
UHGV-1434852_13	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-1434852_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1434852_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1434852_13	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-1434852_14	UniRef90	UniRef90_UPI001C98641B	helix-turn-helix domain-containing protein	NA
UHGV-1434852_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434852_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1434852_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1434852_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1434852_21	UniRef90	UniRef90_X8HXR3	IstB-like ATP-binding protein	NA
UHGV-1434852_21	eggNOG-mapper	1111121.HMPREF1247_0043	IstB-like ATP binding protein	NA
UHGV-1434852_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1434852_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1434852_22	PHROG	phrog_1163	NA	unknown function
UHGV-1434852_22	UniRef90	UniRef90_A0A7C9NN09	DNA replication protein	NA
UHGV-1434852_22	eggNOG-mapper	139871.A9D9L3_9VIRU	calcium ion binding	NA
UHGV-1434852_22	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1434852_22	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1434852_25	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-1434852_29	PHROG	phrog_21525	NA	unknown function
UHGV-1434852_30	UniRef90	UniRef90_A4E7A1	DNA-binding helix-turn-helix protein	NA
UHGV-1434852_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434852_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1434852_30	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-1434852_33	UniRef90	UniRef90_A0A1Y3UEF9	HNHc domain-containing protein	NA
UHGV-1434852_33	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1434852_34	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1434852_34	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-1434852_34	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1434852_35	Structural annotation	PF06530	NA	NA
UHGV-1434852_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1434852_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1434852_38	UniRef90	UniRef90_A0A412AQ32	Cytosine-specific methyltransferase	NA
UHGV-1434852_38	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-1434852_38	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1434852_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1434852_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1434852_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1434852_38	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1434852_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1434852_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1434852_41	UniRef90	UniRef90_UPI000E3BD68B	single-stranded DNA-binding protein	NA
UHGV-1434852_41	eggNOG-mapper	521095.Apar_0020	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1434852_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1434852_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1434852_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1434852_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1434852_41	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1434852_42	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1434852_42	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-1434852_42	eggNOG-mapper	1504822.CCNO01000013_gene307	NA	NA
UHGV-1434852_42	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1434852_43	PHROG	phrog_34396	NA	unknown function
UHGV-1434852_43	UniRef90	UniRef90_UPI0009355547	NA	NA
UHGV-1434852_43	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-1434852_43	Pfam	PF07083	NA	DUF1351
UHGV-1434852_43	Structural annotation	PF07083	NA	NA
UHGV-1434852_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1434852_44	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1434852_44	UniRef90	UniRef90_A0A173XJ55	Holliday junction resolvase	NA
UHGV-1434852_44	eggNOG-mapper	1504822.CCNO01000013_gene309	crossover junction endodeoxyribonuclease activity	NA
UHGV-1434852_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1434852_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1434852_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1434852_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1434852_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1434852_49	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-1434852_49	eggNOG-mapper	1125712.HMPREF1316_2390	BRO family, N-terminal domain	NA
UHGV-1434852_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1434852_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1434852_49	COG	COG3617	Prophage antirepressor	NA
UHGV-1434852_49	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1434852_50	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1434852_50	UniRef90	UniRef90_C4F8D4	HTH cro/C1-type domain-containing protein	NA
UHGV-1434852_50	eggNOG-mapper	521003.COLINT_02305	NA	NA
UHGV-1434852_50	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-1434852_51	PHROG	phrog_24502	zinc-finger domain protein	other
UHGV-1434852_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1434852_52	PHROG	phrog_95	integrase	integration and excision
UHGV-1434852_52	UniRef90	UniRef90_A0A3G9KAD9	Site-specific DNA recombinase	NA
UHGV-1434852_52	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-1434852_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1434852_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-1434852_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1434852_52	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA