UHGV-1434875

Genome information

Genome length 37,776 bps

CDS count 60

Completeness 99.59% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1434875
vOTU ID	vOTU-067056
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0256097
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.64
Jumbo phage	No

Genome content
Genome length	37,776 bps
GC content	58.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.94%
Average CDS length	576.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1434875_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1434875_1	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-1434875_1	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1434875_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1434875_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1434875_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1434875_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1434875_1	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-1434875_2	PHROG	phrog_21498	NA	unknown function
UHGV-1434875_2	UniRef90	UniRef90_A0A3R6J122	Chromosome partitioning protein ParB	NA
UHGV-1434875_2	eggNOG-mapper	1122971.BAME01000082_gene5349	DNA binding	NA
UHGV-1434875_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1434875_2	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1434875_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1434875_3	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-1434875_3	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-1434875_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1434875_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1434875_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1434875_4	KOfam	K06904	NA	NA
UHGV-1434875_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1434875_4	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-1434875_4	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-1434875_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1434875_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1434875_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1434875_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1434875_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1434875_5	UniRef90	UniRef90_A0A2N1PHH4	Phage major capsid protein	NA
UHGV-1434875_5	eggNOG-mapper	398512.JQKC01000009_gene451	Phage capsid family	NA
UHGV-1434875_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1434875_5	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1434875_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1434875_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1434875_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1434875_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1434875_7	PHROG	phrog_19734	NA	unknown function
UHGV-1434875_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1434875_8	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-1434875_9	Structural annotation	TIGR01725	NA	NA
UHGV-1434875_10	PHROG	phrog_88	major tail protein	tail
UHGV-1434875_10	UniRef90	UniRef90_A0A174GEX1	Phage major tail protein, phi13 family	NA
UHGV-1434875_10	eggNOG-mapper	411470.RUMGNA_02073	phage major tail protein, phi13 family	NA
UHGV-1434875_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1434875_11	Structural annotation	PF11836	NA	NA
UHGV-1434875_12	PHROG	phrog_13338	NA	unknown function
UHGV-1434875_12	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1434875_12	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-1434875_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1434875_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1434875_12	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1434875_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1434875_13	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1434875_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1434875_13	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1434875_14	PHROG	phrog_26795	NA	unknown function
UHGV-1434875_14	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-1434875_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1434875_15	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-1434875_16	Structural annotation	PF10651, NF038186	NA	NA
UHGV-1434875_18	PHROG	phrog_19111	NA	unknown function
UHGV-1434875_18	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-1434875_18	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1434875_19	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-1434875_19	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-1434875_19	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1434875_19	COG	COG5492	NA	NA
UHGV-1434875_19	Structural annotation	PF13306, NF041351	NA	NA
UHGV-1434875_21	eggNOG-mapper	1231336.L248_1708	NA	NA
UHGV-1434875_21	Structural annotation	PF14600	NA	NA
UHGV-1434875_24	PHROG	phrog_13256	NA	unknown function
UHGV-1434875_24	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-1434875_25	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-1434875_25	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1434875_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1434875_25	Structural annotation	NF033743	NA	NA
UHGV-1434875_28	eggNOG-mapper	1009370.ALO_12461	NA	NA
UHGV-1434875_28	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-1434875_29	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-1434875_29	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1434875_29	Structural annotation	PF10723	NA	NA
UHGV-1434875_31	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-1434875_34	PHROG	phrog_16490	NA	unknown function
UHGV-1434875_34	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1434875_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1434875_36	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-1434875_36	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1434875_37	KOfam	K14059	int; integrase	NA
UHGV-1434875_37	PHROG	phrog_1	integrase	integration and excision
UHGV-1434875_37	UniRef90	UniRef90_R0BQD6	Tyr recombinase domain-containing protein	NA
UHGV-1434875_37	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-1434875_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1434875_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1434875_37	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1434875_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434875_38	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1434875_39	eggNOG-mapper	622312.ROSEINA2194_02761	NOG18738 non supervised orthologous group	NA
UHGV-1434875_39	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-1434875_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1434875_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1434875_40	UniRef90	UniRef90_UPI00192476E6	helix-turn-helix domain-containing protein	NA
UHGV-1434875_40	eggNOG-mapper	1302863.I872_10325	sequence-specific DNA binding	NA
UHGV-1434875_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434875_40	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1434875_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1434875_41	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1434875_42	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1434875_42	UniRef90	UniRef90_UPI0019565003	helix-turn-helix transcriptional regulator	NA
UHGV-1434875_42	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-1434875_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1434875_42	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1434875_42	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-1434875_45	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1434875_45	UniRef90	UniRef90_UPI00195619BC	helix-turn-helix domain-containing protein	NA
UHGV-1434875_45	eggNOG-mapper	862514.HMPREF0623_0270	Helix-turn-helix domain	NA
UHGV-1434875_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1434875_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1434875_45	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-1434875_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1434875_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1434875_46	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-1434875_46	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1434875_46	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1434875_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1434875_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-1434875_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1434875_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1434875_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1434875_47	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-1434875_47	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1434875_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-1434875_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1434875_47	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1434875_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1434875_48	PHROG	phrog_27290	NA	unknown function
UHGV-1434875_48	UniRef90	UniRef90_UPI00195A3B6D	ParB N-terminal domain-containing protein	NA
UHGV-1434875_48	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-1434875_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1434875_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1434875_48	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1434875_49	Structural annotation	PF10013	NA	NA
UHGV-1434875_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1434875_50	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1434875_54	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1434875_54	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-1434875_57	Structural annotation	PF20549, MF_00436, NF005100, COG5475	NA	NA
UHGV-1434875_60	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1434875_60	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-1434875_60	Structural annotation	PF21578, NF041486	NA	NA