UHGV-1435102

Genome information

Genome length 38,476 bps

CDS count 55

Completeness 84.79% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-1435102
vOTU ID	vOTU-023708
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0260176
BioSample	SAMN02334102
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	22
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.94
Jumbo phage	No

Genome content
Genome length	38,476 bps
GC content	36.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.98%
Average CDS length	633.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1435102_3	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-1435102_3	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-1435102_3	UniRef90	UniRef90_UPI001C637DA1	dCTP deaminase	NA
UHGV-1435102_3	eggNOG-mapper	638303.Thal_0541	Belongs to the dCTP deaminase family	NA
UHGV-1435102_3	Pfam	PF00692	dUTPase	dUTPase
UHGV-1435102_3	COG	COG0717	dCTP deaminase	NA
UHGV-1435102_11	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1435102_11	Pfam	PF10097	NA	DUF2335
UHGV-1435102_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1435102_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1435102_13	UniRef90	UniRef90_F3QJB3	Peptidase S24-like protein	NA
UHGV-1435102_13	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-1435102_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435102_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1435102_13	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1435102_13	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1435102_14	UniRef90	UniRef90_UPI001F39DB28	helix-turn-helix domain-containing protein	NA
UHGV-1435102_14	eggNOG-mapper	1266925.JHVX01000006_gene2048	NA	NA
UHGV-1435102_16	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1435102_16	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1435102_16	UniRef90	UniRef90_A0A7U3MFN3	DNA polymerase III epsilon subunit protein	NA
UHGV-1435102_16	eggNOG-mapper	556269.ACDQ01000008_gene1741	Exonuclease	NA
UHGV-1435102_16	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1435102_16	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1435102_16	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-1435102_17	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-1435102_17	Structural annotation	PF06530	NA	NA
UHGV-1435102_19	UniRef90	UniRef90_UPI001459C027	ATP-binding protein	NA
UHGV-1435102_19	eggNOG-mapper	243275.TDE_0229	sigma factor antagonist activity	NA
UHGV-1435102_19	Pfam	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c_3
UHGV-1435102_19	COG	COG2172	Anti-sigma regulatory factor (Ser/Thr protein kinase)	NA
UHGV-1435102_19	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-1435102_20	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-1435102_21	PHROG	phrog_824	NA	unknown function
UHGV-1435102_21	UniRef90	UniRef90_UPI000375638B	VRR-NUC domain-containing protein	NA
UHGV-1435102_21	eggNOG-mapper	1121935.AQXX01000130_gene2430	VRR-NUC domain	NA
UHGV-1435102_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1435102_21	Structural annotation	PF08774	NA	NA
UHGV-1435102_22	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1435102_22	PHROG	phrog_7	endolysin	lysis
UHGV-1435102_22	UniRef90	UniRef90_A0A662Z686	Lysozyme	NA
UHGV-1435102_22	eggNOG-mapper	10753.B7SSN6_BPNF	Phage lysozyme	NA
UHGV-1435102_22	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1435102_22	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1435102_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1435102_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1435102_24	UniRef90	UniRef90_UPI001A2449CC	HNH endonuclease	NA
UHGV-1435102_24	eggNOG-mapper	1395516.PMO01_05000	Endonuclease	NA
UHGV-1435102_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1435102_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1435102_24	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1435102_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1435102_25	UniRef90	UniRef90_A0A5D9DC62	Phage terminase small subunit P27 family	NA
UHGV-1435102_25	eggNOG-mapper	443152.MDG893_20639	Phage terminase, small subunit	NA
UHGV-1435102_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1435102_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1435102_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1435102_26	UniRef90	UniRef90_A0A2L0TW89	Terminase	NA
UHGV-1435102_26	eggNOG-mapper	1492922.GY26_16080	Phage Terminase	NA
UHGV-1435102_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1435102_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1435102_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1435102_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1435102_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1435102_27	UniRef90	UniRef90_UPI001F002258	phage portal protein	NA
UHGV-1435102_27	eggNOG-mapper	1121940.AUDZ01000007_gene2197	Phage portal protein	NA
UHGV-1435102_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1435102_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1435102_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1435102_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1435102_28	KOfam	K06904	NA	NA
UHGV-1435102_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1435102_28	UniRef90	UniRef90_UPI000AA9395C	HK97 family phage prohead protease	NA
UHGV-1435102_28	eggNOG-mapper	279238.Saro_0648	Caudovirus prohead serine protease	NA
UHGV-1435102_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1435102_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1435102_28	COG	COG3740	Phage head maturation protease	NA
UHGV-1435102_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1435102_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1435102_29	UniRef90	UniRef90_A0A097R4F8	Capsid protein	NA
UHGV-1435102_29	eggNOG-mapper	1453496.AT03_15245	capsid protein	NA
UHGV-1435102_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1435102_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1435102_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1435102_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1435102_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1435102_30	eggNOG-mapper	1027273.GZ77_20495	Phage gp6-like head-tail connector protein	NA
UHGV-1435102_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1435102_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1435102_31	PHROG	phrog_25	head closure Hc1	connector
UHGV-1435102_31	UniRef90	UniRef90_A0A088UAA8	Phage head-tail joining family protein	NA
UHGV-1435102_31	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-1435102_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1435102_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1435102_33	PHROG	phrog_209	portal protein	head and packaging
UHGV-1435102_33	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-1435102_33	Structural annotation	PF09646	NA	NA
UHGV-1435102_34	PHROG	phrog_165	tail sheath	tail
UHGV-1435102_34	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-1435102_34	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-1435102_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1435102_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1435102_34	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-1435102_34	Structural annotation	PF10758, COG4386	NA	NA
UHGV-1435102_35	PHROG	phrog_185	tail tube protein	tail
UHGV-1435102_35	UniRef90	UniRef90_A0A1B9LF96	Phage tail protein	NA
UHGV-1435102_35	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-1435102_35	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-1435102_35	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-1435102_36	eggNOG-mapper	1124983.PFLCHA0_c12520	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-1435102_36	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1435102_36	Structural annotation	PF10109, COG4518	NA	NA
UHGV-1435102_37	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-1435102_37	UniRef90	UniRef90_A0A5C7NK11	Phage tail tape measure protein	NA
UHGV-1435102_37	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-1435102_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1435102_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1435102_37	COG	COG5283	Phage-related tail protein	NA
UHGV-1435102_37	Structural annotation	TIGR01760	NA	NA
UHGV-1435102_38	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-1435102_38	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-1435102_38	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-1435102_38	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-1435102_38	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-1435102_38	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-1435102_40	PHROG	phrog_177	tail protein	tail
UHGV-1435102_40	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-1435102_40	eggNOG-mapper	1042876.PPS_1262	tail protein	NA
UHGV-1435102_40	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-1435102_40	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-1435102_40	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1435102_41	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-1435102_41	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-1435102_41	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-1435102_41	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-1435102_41	COG	COG4384	NA	NA
UHGV-1435102_42	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-1435102_42	UniRef90	UniRef90_UPI000D82E41E	NA	NA
UHGV-1435102_42	eggNOG-mapper	457415.HMPREF1006_02490	PAAR motif	NA
UHGV-1435102_42	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-1435102_42	Pfam	PF19940	NA	DUF6402
UHGV-1435102_42	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-1435102_42	Structural annotation	PF19940, PF05488, NF033420, COG4104	NA	NA
UHGV-1435102_45	Structural annotation	PF20505, NF001460	NA	NA
UHGV-1435102_48	PHROG	phrog_180	tail protein	tail
UHGV-1435102_48	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-1435102_48	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-1435102_48	Pfam	PF07409	NA	GP46
UHGV-1435102_48	COG	COG4381	NA	NA
UHGV-1435102_48	Structural annotation	PF07409, COG4381	NA	NA
UHGV-1435102_49	PHROG	phrog_6	baseplate protein	tail
UHGV-1435102_49	UniRef90	UniRef90_R5ELP9	Baseplate_J domain-containing protein	NA
UHGV-1435102_49	eggNOG-mapper	296591.Bpro_3733	Baseplate J-like protein	NA
UHGV-1435102_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1435102_49	COG	COG3299	NA	NA
UHGV-1435102_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1435102_50	PHROG	phrog_203	tail protein	tail
UHGV-1435102_50	UniRef90	UniRef90_UPI000BB8DEB6	YmfQ family protein	NA
UHGV-1435102_50	eggNOG-mapper	55884.O22003_BPSF5	NA	NA
UHGV-1435102_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1435102_50	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1435102_51	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-1435102_51	UniRef90	UniRef90_UPI0013F5B3AA	phage tail protein	NA
UHGV-1435102_51	eggNOG-mapper	526218.Sterm_1437	Phage tail sheath protein beta-sandwich domain	NA
UHGV-1435102_51	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1435102_51	Structural annotation	PF07484, COG4675	NA	NA