UHGV-1435343

Genome information

Genome length 32,336 bps

CDS count 52

Completeness 60.11% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-1435343
vOTU ID	vOTU-022967
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0224655
BioSample	SAMEA2737752
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.89
Jumbo phage	No

Genome content
Genome length	32,336 bps
GC content	45.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.90%
Average CDS length	568.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1435343_1	PHROG	phrog_786	NA	unknown function
UHGV-1435343_1	UniRef90	UniRef90_A0A376F9V3	Gp11	NA
UHGV-1435343_1	eggNOG-mapper	549.BW31_01427	NA	NA
UHGV-1435343_2	PHROG	phrog_1261	NA	unknown function
UHGV-1435343_2	UniRef90	UniRef90_A0A1Q5VGI5	50S ribosomal protein L13	NA
UHGV-1435343_2	eggNOG-mapper	158822.LH89_20520	NA	NA
UHGV-1435343_3	PHROG	phrog_797	NA	unknown function
UHGV-1435343_3	UniRef90	UniRef90_Q5G8X6	Gp13	NA
UHGV-1435343_3	eggNOG-mapper	101570.Q5G8X6_9CAUD	NA	NA
UHGV-1435343_3	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1435343_4	UniRef90	UniRef90_UPI000BE57C21	HK97 gp10 family phage protein	NA
UHGV-1435343_4	eggNOG-mapper	1147140.H6WRT9_9CAUD	NA	NA
UHGV-1435343_4	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1435343_5	PHROG	phrog_782	NA	unknown function
UHGV-1435343_5	UniRef90	UniRef90_Q5G8X4	Gp15	NA
UHGV-1435343_5	eggNOG-mapper	101570.Q5G8X4_9CAUD	NA	NA
UHGV-1435343_5	Structural annotation	PF12691	NA	NA
UHGV-1435343_6	PHROG	phrog_853	major tail protein	tail
UHGV-1435343_6	UniRef90	UniRef90_A0A2X5QNX8	Predicted secreted protein	NA
UHGV-1435343_6	eggNOG-mapper	1168549.I6S624_9CAUD	Phage major tail protein 2	NA
UHGV-1435343_6	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1435343_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1435343_7	PHROG	phrog_791	NA	unknown function
UHGV-1435343_7	UniRef90	UniRef90_UPI0010936B92	NA	NA
UHGV-1435343_7	eggNOG-mapper	1147140.H6WRU2_9CAUD	NA	NA
UHGV-1435343_7	Pfam	PF19759	NA	DUF6246
UHGV-1435343_7	Structural annotation	PF19759	NA	NA
UHGV-1435343_9	KOfam	K11909	vasI; type VI secretion system protein VasI	NA
UHGV-1435343_9	PHROG	phrog_1848	NA	unknown function
UHGV-1435343_9	UniRef90	UniRef90_V0ANP8	Type VI secretion-associated protein, VC_A0118 family	NA
UHGV-1435343_9	eggNOG-mapper	1185766.DL1_03915	Type VI secretion system VasI, EvfG, VC_A0118	NA
UHGV-1435343_9	Pfam	PF11319	Type VI secretion system VasI, EvfG, VC_A0118	VasI
UHGV-1435343_11	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-1435343_11	UniRef90	UniRef90_A0A4T6JV98	Tail tape measure protein	NA
UHGV-1435343_11	eggNOG-mapper	1168549.I6S1R4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1435343_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1435343_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1435343_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1435343_13	PHROG	phrog_1525	NA	unknown function
UHGV-1435343_14	PHROG	phrog_29810	NA	unknown function
UHGV-1435343_15	PHROG	phrog_14	minor tail protein	tail
UHGV-1435343_15	UniRef90	UniRef90_UPI0005A8671A	phage tail protein	NA
UHGV-1435343_15	eggNOG-mapper	101570.Q5G8W6_9CAUD	Phage minor tail protein	NA
UHGV-1435343_15	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1435343_15	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1435343_16	PHROG	phrog_3249	NA	unknown function
UHGV-1435343_16	eggNOG-mapper	355246.Q333C7_9CAUD	NA	NA
UHGV-1435343_19	PHROG	phrog_5689	NA	unknown function
UHGV-1435343_19	UniRef90	UniRef90_V0ACM4	ANT domain-containing protein	NA
UHGV-1435343_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1435343_20	PHROG	phrog_38567	NA	unknown function
UHGV-1435343_21	PHROG	phrog_29559	NA	unknown function
UHGV-1435343_21	UniRef90	UniRef90_A0A4T6JV41	Transporter	NA
UHGV-1435343_22	PHROG	phrog_18	minor tail protein	tail
UHGV-1435343_22	UniRef90	UniRef90_V0A922	Phage minor tail protein L	NA
UHGV-1435343_22	eggNOG-mapper	101570.Q5G8W3_9CAUD	Phage minor tail protein L	NA
UHGV-1435343_22	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1435343_22	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1435343_22	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1435343_23	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1435343_23	PHROG	phrog_30	minor tail protein	tail
UHGV-1435343_23	UniRef90	UniRef90_V0ANQ7	NlpC/P60 family protein	NA
UHGV-1435343_23	eggNOG-mapper	1115512.EH105704_01_02090	JAB/MPN domain	NA
UHGV-1435343_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1435343_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1435343_23	Structural annotation	PF00877, TIGR02219, NF041370, COG0791, COG1310	NA	NA
UHGV-1435343_24	PHROG	phrog_4554	tail protein	tail
UHGV-1435343_24	UniRef90	UniRef90_A0A4T6JV72	Tail assembly protein	NA
UHGV-1435343_24	eggNOG-mapper	1147140.H6WRW3_9CAUD	virus tail assembly	NA
UHGV-1435343_24	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1435343_25	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1435343_25	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1435343_25	UniRef90	UniRef90_UPI000A8117DB	phage tail protein	NA
UHGV-1435343_25	eggNOG-mapper	1147140.H6WRW4_9CAUD	Putative phage tail protein	NA
UHGV-1435343_25	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-1435343_25	Pfam	PF09327	NA	DUF1983
UHGV-1435343_25	Structural annotation	PF13550, PF09327, PF16303, PF14879, PF03944, MF_04116, NF040662, NF038126, TIGR04183, COG4733	NA	NA
UHGV-1435343_26	PHROG	phrog_12984	lipoprotein	other
UHGV-1435343_26	UniRef90	UniRef90_UPI000BB719DD	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-1435343_26	eggNOG-mapper	1540098.A0A0A0RVZ8_9CAUD	NA	NA
UHGV-1435343_27	PHROG	phrog_6578	tail fiber protein	tail
UHGV-1435343_27	UniRef90	UniRef90_UPI0006A0C5EC	pyocin knob domain-containing S74 family peptidase	NA
UHGV-1435343_27	eggNOG-mapper	1147152.K7PGT9_9CAUD	peptidoglycan catabolic process	NA
UHGV-1435343_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1435343_28	KOfam	K14059	int; integrase	NA
UHGV-1435343_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1435343_28	UniRef90	UniRef90_A0A0K3F9G4	Integrase	NA
UHGV-1435343_28	eggNOG-mapper	1168549.I6R9B6_9CAUD	Pfam:Arm-DNA-bind_3	NA
UHGV-1435343_28	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-1435343_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1435343_28	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-1435343_29	UniRef90	UniRef90_A0A0K3F0V3	Helix-turn-helix domain-containing protein	NA
UHGV-1435343_29	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1435343_30	Structural annotation	NF037951	NA	NA
UHGV-1435343_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1435343_32	UniRef90	UniRef90_U9ZTE9	NinB protein	NA
UHGV-1435343_32	eggNOG-mapper	1147143.K7P6U0_9CAUD	NinB protein	NA
UHGV-1435343_32	Pfam	PF05772	NinB protein	NinB
UHGV-1435343_32	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1435343_33	PHROG	phrog_21123	NA	unknown function
UHGV-1435343_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1435343_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1435343_36	UniRef90	UniRef90_A0A2X5PKT2	DNA helicase	NA
UHGV-1435343_36	eggNOG-mapper	1127357.I1TEG1_9CAUD	DnaB-like helicase N terminal domain	NA
UHGV-1435343_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1435343_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1435343_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1435343_37	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1435343_37	UniRef90	UniRef90_A0A6B9X1J2	Putative phosphoesterase	NA
UHGV-1435343_37	eggNOG-mapper	1315956.M9QWT5_9CAUD	hydrolase activity	NA
UHGV-1435343_37	Structural annotation	PF12850, MF_00325, NF041030, COG1311	NA	NA
UHGV-1435343_38	PHROG	phrog_681	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1435343_38	UniRef90	UniRef90_UPI0018B077C4	GIY-YIG nuclease family protein	NA
UHGV-1435343_38	eggNOG-mapper	679935.Alfi_0282	Restriction endonuclease	NA
UHGV-1435343_38	Pfam	PF21817	CapR homology domain	CapR
UHGV-1435343_38	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-1435343_38	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-1435343_38	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-1435343_38	Structural annotation	PF10544, PF05265, PF14311, COG2827	NA	NA
UHGV-1435343_40	PHROG	phrog_20981	NA	unknown function
UHGV-1435343_40	UniRef90	UniRef90_A0A8E2SIL6	NA	NA
UHGV-1435343_40	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-1435343_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1435343_40	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1435343_41	PHROG	phrog_4617	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1435343_41	UniRef90	UniRef90_A0A2X5PKU5	Helix-turn-helix domain-containing protein	NA
UHGV-1435343_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1435343_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1435343_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1435343_42	UniRef90	UniRef90_A0A8E0J140	HTH cro/C1-type domain-containing protein	NA
UHGV-1435343_42	eggNOG-mapper	173443.Q8HAG7_BPST6	Peptidase S24-like	NA
UHGV-1435343_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435343_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1435343_42	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1435343_44	PHROG	phrog_34942	NA	unknown function
UHGV-1435343_45	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1435343_45	UniRef90	UniRef90_A0A4T6JUX0	Recombinase	NA
UHGV-1435343_45	eggNOG-mapper	754331.AEME01000001_gene3599	ERF superfamily	NA
UHGV-1435343_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-1435343_45	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1435343_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1435343_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1435343_46	UniRef90	UniRef90_A0A2X5PKV7	Single-stranded DNA-binding protein	NA
UHGV-1435343_46	eggNOG-mapper	1127514.H9C0R6_9CAUD	Single-strand binding protein family	NA
UHGV-1435343_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1435343_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1435343_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1435343_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1435343_47	PHROG	phrog_656	abc2 anti-RecBCD	moron, auxiliary metabolic gene and host takeover
UHGV-1435343_47	UniRef90	UniRef90_A0A2X5QNF8	Anti-RecBCD protein 2	NA
UHGV-1435343_47	eggNOG-mapper	10761.Q716F0_BPSFV	NA	NA
UHGV-1435343_48	PHROG	phrog_28542	NA	unknown function
UHGV-1435343_48	UniRef90	UniRef90_UPI00132F83E7	NA	NA
UHGV-1435343_50	PHROG	phrog_28396	NA	unknown function
UHGV-1435343_50	UniRef90	UniRef90_A0A2X5S6S8	Toxin-antitoxin system toxin subunit	NA
UHGV-1435343_51	PHROG	phrog_34199	NA	unknown function
UHGV-1435343_52	PHROG	phrog_34371	NA	unknown function