UHGV-1435495

Genome information

Genome length 20,168 bps

CDS count 32

Completeness 53.25% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-1435495
vOTU ID	vOTU-033717
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0147495
BioSample	SAMN00791916
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.87
Jumbo phage	No

Genome content
Genome length	20,168 bps
GC content	43.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.88%
Average CDS length	587.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1435495_1	PHROG	phrog_5610	NA	unknown function
UHGV-1435495_1	UniRef90	UniRef90_UPI0012E22207	NA	NA
UHGV-1435495_1	eggNOG-mapper	1158608.I583_01516	NA	NA
UHGV-1435495_1	Pfam	PF16729	NA	DUF5067
UHGV-1435495_1	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-1435495_2	PHROG	phrog_87	metallo-protease	other
UHGV-1435495_2	UniRef90	UniRef90_R2Q0T5	Peptidase_M78 domain-containing protein	NA
UHGV-1435495_2	eggNOG-mapper	1158606.I579_02161	NA	NA
UHGV-1435495_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1435495_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1435495_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1435495_3	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1435495_3	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1435495_3	UniRef90	UniRef90_R2SL62	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1435495_3	eggNOG-mapper	1158606.I579_02162	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1435495_3	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-1435495_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1435495_3	COG	COG0338	DNA-adenine methylase	NA
UHGV-1435495_3	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-1435495_4	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-1435495_4	PHROG	phrog_3940	NA	unknown function
UHGV-1435495_4	UniRef90	UniRef90_UPI0011A9D955	ATP-binding protein	NA
UHGV-1435495_4	eggNOG-mapper	1121105.ATXL01000006_gene1347	AAA ATPase domain	NA
UHGV-1435495_4	PADLOC	retron_type_I_B1_atpase_toprim_cluster22_2	NA	Retron
UHGV-1435495_4	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-1435495_4	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1435495_4	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-1435495_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1435495_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1435495_5	UniRef90	UniRef90_UPI001E50CA12	helix-turn-helix domain-containing protein	NA
UHGV-1435495_5	eggNOG-mapper	1027396.LMOSA_9200	Transcriptional	NA
UHGV-1435495_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1435495_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435495_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1435495_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1435495_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1435495_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1435495_6	UniRef90	UniRef90_A0A4Q0CX71	XRE family transcriptional regulator	NA
UHGV-1435495_6	eggNOG-mapper	511437.Lbuc_1451	Helix-turn-helix XRE-family like proteins	NA
UHGV-1435495_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435495_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1435495_7	PHROG	phrog_1970	NA	unknown function
UHGV-1435495_7	UniRef90	UniRef90_C9AMX1	Predicted protein	NA
UHGV-1435495_7	eggNOG-mapper	1104325.M7W_1330	NA	NA
UHGV-1435495_8	PHROG	phrog_1124	transcriptional regulator	transcription regulation
UHGV-1435495_8	UniRef90	UniRef90_A0A7H4KXZ9	HTH cro/C1-type domain-containing protein	NA
UHGV-1435495_8	eggNOG-mapper	1158614.I592_01084	NA	NA
UHGV-1435495_8	Structural annotation	PF01381, TIGR02607, COG1476	NA	NA
UHGV-1435495_9	UniRef90	UniRef90_UPI001E5E3BE7	helix-turn-helix domain-containing protein	NA
UHGV-1435495_9	eggNOG-mapper	1139219.I569_00213	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1435495_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435495_12	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1435495_12	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-1435495_12	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1435495_12	Pfam	PF03837	RecT family	RecT
UHGV-1435495_12	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1435495_13	KOfam	K16899	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	NA
UHGV-1435495_13	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1435495_13	UniRef90	UniRef90_UPI0010F594DC	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1435495_13	eggNOG-mapper	1300150.EMQU_0766	NA	NA
UHGV-1435495_13	Pfam	PF12684	NA	DUF3799
UHGV-1435495_13	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1435495_13	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1435495_14	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1435495_14	UniRef90	UniRef90_UPI001485198F	NA	NA
UHGV-1435495_14	eggNOG-mapper	977801.F0PII1_9VIRU	NA	NA
UHGV-1435495_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1435495_14	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1435495_14	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1435495_14	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-1435495_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1435495_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1435495_15	UniRef90	UniRef90_UPI0018831C89	ATP-binding protein	NA
UHGV-1435495_15	eggNOG-mapper	565653.EGBG_01947	DNA replication protein	NA
UHGV-1435495_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1435495_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1435495_15	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1435495_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1435495_16	UniRef90	UniRef90_A0A6I4XLG1	NA	NA
UHGV-1435495_16	eggNOG-mapper	565653.EGBG_00895	NA	NA
UHGV-1435495_16	Pfam	PF06356	NA	DUF1064
UHGV-1435495_16	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-1435495_17	PHROG	phrog_3302	NA	unknown function
UHGV-1435495_17	eggNOG-mapper	1140001.I571_01143	NA	NA
UHGV-1435495_19	KOfam	K24072	xpf; positive control factor	NA
UHGV-1435495_19	PHROG	phrog_1190	RNA polymerase sigma factor	transcription regulation
UHGV-1435495_19	UniRef90	UniRef90_A0A8B5W017	Positive control factor	NA
UHGV-1435495_19	eggNOG-mapper	226185.EF_1450	DNA-templated transcription, initiation	NA
UHGV-1435495_19	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1435495_19	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1435495_19	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1435495_20	PHROG	phrog_10213	NA	unknown function
UHGV-1435495_20	UniRef90	UniRef90_C9E2P6	SbcC domain protein	NA
UHGV-1435495_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1435495_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1435495_22	UniRef90	UniRef90_A0A376GYM6	Phage terminase, small subunit	NA
UHGV-1435495_22	eggNOG-mapper	1497679.EP56_07800	Terminase small subunit	NA
UHGV-1435495_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1435495_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1435495_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1435495_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1435495_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1435495_23	UniRef90	UniRef90_UPI00026C87C6	PBSX family phage terminase large subunit	NA
UHGV-1435495_23	eggNOG-mapper	1300150.EMQU_2501	Terminase RNAseH like domain	NA
UHGV-1435495_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1435495_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1435495_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1435495_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1435495_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1435495_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1435495_24	UniRef90	UniRef90_UPI0010FA16A8	phage portal protein	NA
UHGV-1435495_24	eggNOG-mapper	1300150.EMQU_2500	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1435495_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1435495_24	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1435495_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1435495_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1435495_25	UniRef90	UniRef90_UPI0010F625F1	phage capsid protein	NA
UHGV-1435495_25	eggNOG-mapper	1300150.EMQU_2499	Phage minor capsid protein 2	NA
UHGV-1435495_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1435495_25	Structural annotation	PF06152	NA	NA
UHGV-1435495_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1435495_27	UniRef90	UniRef90_UPI00137AC9A7	phage scaffolding protein	NA
UHGV-1435495_27	eggNOG-mapper	1300150.EMQU_2498	Phage minor structural protein GP20	NA
UHGV-1435495_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1435495_27	Structural annotation	PF06810	NA	NA
UHGV-1435495_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-1435495_28	UniRef90	UniRef90_V7ZS76	Capsid protein	NA
UHGV-1435495_28	eggNOG-mapper	1158601.I585_01156	NA	NA
UHGV-1435495_28	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1435495_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1435495_29	UniRef90	UniRef90_A0A376H5I9	Protein gp8	NA
UHGV-1435495_29	eggNOG-mapper	1229517.AMFD01000018_gene183	NA	NA
UHGV-1435495_30	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1435495_30	UniRef90	UniRef90_UPI0010F6C1A7	putative minor capsid protein	NA
UHGV-1435495_30	eggNOG-mapper	1229517.AMFD01000018_gene182	Minor capsid protein	NA
UHGV-1435495_30	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1435495_30	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1435495_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1435495_31	UniRef90	UniRef90_UPI001CBEC5F8	minor capsid protein	NA
UHGV-1435495_31	eggNOG-mapper	1460635.JCM19038_3470	Minor capsid protein	NA
UHGV-1435495_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1435495_31	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1435495_32	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1435495_32	eggNOG-mapper	1229517.AMFD01000018_gene180	Minor capsid protein from bacteriophage	NA