UHGV-1435618

Genome information

Genome length 32,389 bps

CDS count 53

Completeness 80.51% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1435618
vOTU ID	vOTU-024230
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0224962
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.03
Jumbo phage	No

Genome content
Genome length	32,389 bps
GC content	51.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.53%
Average CDS length	544.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1435618_1	PHROG	phrog_824	NA	unknown function
UHGV-1435618_1	UniRef90	UniRef90_UPI000A266FAF	VRR-NUC domain-containing protein	NA
UHGV-1435618_1	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-1435618_1	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1435618_1	Structural annotation	PF08774	NA	NA
UHGV-1435618_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1435618_3	PHROG	phrog_10250	NA	unknown function
UHGV-1435618_3	UniRef90	UniRef90_UPI00082E905F	PBSX family phage terminase large subunit	NA
UHGV-1435618_3	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-1435618_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1435618_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1435618_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-1435618_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1435618_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-1435618_4	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-1435618_4	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1435618_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1435618_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1435618_5	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1435618_5	UniRef90	UniRef90_A0A3D2MUF2	Phage_Mu_F domain-containing protein	NA
UHGV-1435618_5	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1435618_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1435618_5	COG	COG2369	NA	NA
UHGV-1435618_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1435618_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1435618_6	UniRef90	UniRef90_A0A6H1MR47	Putative tail component	NA
UHGV-1435618_6	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1435618_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1435618_6	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1435618_7	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1435618_7	Structural annotation	PF06810	NA	NA
UHGV-1435618_8	PHROG	phrog_544	major head protein	head and packaging
UHGV-1435618_8	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1435618_8	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1435618_8	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1435618_10	PHROG	phrog_17977	NA	unknown function
UHGV-1435618_10	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1435618_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1435618_11	Structural annotation	PF11367	NA	NA
UHGV-1435618_12	PHROG	phrog_885	major tail protein	tail
UHGV-1435618_12	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1435618_12	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1435618_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1435618_13	PHROG	phrog_18646	NA	unknown function
UHGV-1435618_13	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-1435618_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1435618_14	UniRef90	UniRef90_A0A4D6A5R1	Minor tail protein	NA
UHGV-1435618_14	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-1435618_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1435618_14	Structural annotation	PF20155	NA	NA
UHGV-1435618_15	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1435618_15	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-1435618_15	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-1435618_15	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1435618_15	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1435618_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1435618_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1435618_16	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1435618_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1435618_17	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1435618_18	PHROG	phrog_538	minor tail protein	tail
UHGV-1435618_18	eggNOG-mapper	1507.HMPREF0262_01273	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1435618_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1435618_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1435618_21	UniRef90	UniRef90_R6AVY2	Cell wall-associated hydrolase invasion-associated protein	NA
UHGV-1435618_21	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-1435618_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1435618_21	Structural annotation	NF033743, COG0791	NA	NA
UHGV-1435618_22	UniRef90	UniRef90_A0A2V2DP28	Holin	NA
UHGV-1435618_22	COG	COG5546	NA	NA
UHGV-1435618_25	PHROG	phrog_21718	NA	unknown function
UHGV-1435618_26	PHROG	phrog_22984	NA	unknown function
UHGV-1435618_27	PHROG	phrog_16490	NA	unknown function
UHGV-1435618_27	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1435618_28	PHROG	phrog_20016	NA	unknown function
UHGV-1435618_28	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1435618_28	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1435618_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1435618_29	Structural annotation	PF12510	NA	NA
UHGV-1435618_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1435618_33	PHROG	phrog_674	NA	unknown function
UHGV-1435618_33	UniRef90	UniRef90_UPI0019158D6E	NA	NA
UHGV-1435618_33	eggNOG-mapper	202752.JL53_03685	NA	NA
UHGV-1435618_33	Pfam	PF07083	NA	DUF1351
UHGV-1435618_33	Structural annotation	PF07083	NA	NA
UHGV-1435618_34	PHROG	phrog_11717	NA	unknown function
UHGV-1435618_34	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-1435618_34	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-1435618_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1435618_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1435618_35	UniRef90	UniRef90_R5AH99	Single-stranded DNA-binding protein	NA
UHGV-1435618_35	eggNOG-mapper	1304880.JAGB01000003_gene1326	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1435618_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1435618_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1435618_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1435618_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1435618_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1435618_36	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1435618_36	PHROG	phrog_11992	NA	unknown function
UHGV-1435618_36	UniRef90	UniRef90_A0A316RX24	ZnF_CHCC domain-containing protein	NA
UHGV-1435618_36	eggNOG-mapper	1121334.KB911066_gene1111	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1435618_36	PADLOC	drt-UG29	DRT	DRT
UHGV-1435618_36	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1435618_36	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1435618_36	Structural annotation	PF01807	NA	NA
UHGV-1435618_37	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1435618_37	UniRef90	UniRef90_UPI001897B4BF	NA	NA
UHGV-1435618_37	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-1435618_37	Pfam	PF06048	NA	DUF927
UHGV-1435618_37	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1435618_37	COG	COG5519	NA	NA
UHGV-1435618_37	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1435618_38	UniRef90	UniRef90_A0A1H7EX90	ArdcN domain-containing protein	NA
UHGV-1435618_38	eggNOG-mapper	515622.bpr_IV167	NA	NA
UHGV-1435618_40	Structural annotation	PF16533, COG5420	NA	NA
UHGV-1435618_45	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-1435618_48	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1435618_48	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1435618_48	UniRef90	UniRef90_UPI0011069ADC	FAD-dependent thymidylate synthase	NA
UHGV-1435618_48	eggNOG-mapper	509191.AEDB02000067_gene837	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1435618_48	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1435618_48	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1435618_48	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1435618_48	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1435618_51	PHROG	phrog_16123	NA	unknown function
UHGV-1435618_51	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-1435618_53	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1435618_53	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1435618_53	UniRef90	UniRef90_A0A0U3FFZ6	Type III restriction/modification enzyme restriction subunit	NA
UHGV-1435618_53	eggNOG-mapper	903814.ELI_1785	NA	NA
UHGV-1435618_53	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1435618_53	COG	COG1061	Superfamily II DNA or RNA helicase	NA