UHGV-1436399

Genome information

Genome length 29,172 bps

CDS count 43

Completeness 69.49% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-1436399
vOTU ID	vOTU-016744
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0206683
BioSample	SAMD00036201
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.09
Jumbo phage	No

Genome content
Genome length	29,172 bps
GC content	49.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	88.85%
Average CDS length	605.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1436399_1	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-1436399_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1436399_3	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-1436399_5	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-1436399_6	PHROG	phrog_18725	NA	unknown function
UHGV-1436399_6	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-1436399_7	PHROG	phrog_13879	NA	unknown function
UHGV-1436399_7	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-1436399_7	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-1436399_8	PHROG	phrog_1194	NA	unknown function
UHGV-1436399_8	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-1436399_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1436399_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1436399_9	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1436399_9	COG	COG5283	Phage-related tail protein	NA
UHGV-1436399_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1436399_10	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1436399_10	COG	COG5283	Phage-related tail protein	NA
UHGV-1436399_11	PHROG	phrog_706	NA	unknown function
UHGV-1436399_11	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-1436399_11	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-1436399_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1436399_11	Structural annotation	PF06854	NA	NA
UHGV-1436399_12	PHROG	phrog_11299	NA	unknown function
UHGV-1436399_12	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-1436399_13	PHROG	phrog_3099	NA	unknown function
UHGV-1436399_13	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1436399_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1436399_14	PHROG	phrog_3266	tail completion	connector
UHGV-1436399_14	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-1436399_14	Structural annotation	PF20765	NA	NA
UHGV-1436399_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1436399_15	UniRef90	UniRef90_UPI000E44F835	minor capsid protein	NA
UHGV-1436399_15	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-1436399_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1436399_15	Structural annotation	PF11114	NA	NA
UHGV-1436399_16	PHROG	phrog_3366	NA	unknown function
UHGV-1436399_16	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-1436399_16	Pfam	PF20536	NA	DUF6751
UHGV-1436399_16	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1436399_17	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-1436399_19	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-1436399_19	Pfam	PF08308	PEGA domain	PEGA
UHGV-1436399_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1436399_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1436399_20	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-1436399_20	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-1436399_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1436399_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1436399_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1436399_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1436399_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1436399_21	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-1436399_21	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-1436399_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1436399_21	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1436399_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1436399_24	UniRef90	UniRef90_UPI001106F6CE	phage minor capsid protein	NA
UHGV-1436399_24	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-1436399_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1436399_24	COG	COG2369	NA	NA
UHGV-1436399_24	Structural annotation	PF06152	NA	NA
UHGV-1436399_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1436399_25	UniRef90	UniRef90_UPI0011062C56	phage portal protein	NA
UHGV-1436399_25	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-1436399_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1436399_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1436399_26	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-1436399_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1436399_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1436399_27	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-1436399_27	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-1436399_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1436399_27	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1436399_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1436399_28	UniRef90	UniRef90_R0CLX0	Phage terminase small subunit	NA
UHGV-1436399_28	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-1436399_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1436399_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1436399_28	COG	COG5484	NA	NA
UHGV-1436399_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1436399_29	UniRef90	UniRef90_UPI000C75C6BE	SLATT domain-containing protein	NA
UHGV-1436399_29	PADLOC	drt-cluster7	DRT	DRT
UHGV-1436399_29	Pfam	PF18160	SMODS and SLOG-associating 2TM effector domain family 5	SLATT_5
UHGV-1436399_30	PHROG	phrog_1558	NA	unknown function
UHGV-1436399_30	UniRef90	UniRef90_UPI001D077CB1	helix-turn-helix domain-containing protein	NA
UHGV-1436399_30	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-1436399_30	Structural annotation	PF13613, MF_00245, NF008895, COG2739	NA	NA
UHGV-1436399_38	Structural annotation	PF16535, NF011863	NA	NA
UHGV-1436399_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1436399_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1436399_39	UniRef90	UniRef90_A8RGI9	Helicase ATP-binding domain-containing protein	NA
UHGV-1436399_39	eggNOG-mapper	411902.CLOBOL_00156	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-1436399_39	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1436399_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1436399_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1436399_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1436399_39	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-1436399_40	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1436399_40	UniRef90	UniRef90_A8RGJ0	VRR-NUC domain-containing protein	NA
UHGV-1436399_40	eggNOG-mapper	411902.CLOBOL_00157	COG NOG18350 non supervised orthologous group	NA
UHGV-1436399_40	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1436399_41	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1436399_41	UniRef90	UniRef90_A0A174FV99	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1436399_41	eggNOG-mapper	411902.CLOBOL_02544	Virulence-associated protein E	NA
UHGV-1436399_41	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1436399_41	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1436399_41	Structural annotation	PF05272, NF011296, COG5545	NA	NA
UHGV-1436399_42	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1436399_42	UniRef90	UniRef90_I7KTD7	DNA primase, phage associated	NA
UHGV-1436399_42	eggNOG-mapper	411902.CLOBOL_02544	Virulence-associated protein E	NA
UHGV-1436399_42	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1436399_42	Structural annotation	PF03090, NF040562	NA	NA
UHGV-1436399_43	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1436399_43	PHROG	phrog_7766	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1436399_43	UniRef90	UniRef90_A0A1G4TXV9	DNA polymerase	NA
UHGV-1436399_43	eggNOG-mapper	411902.CLOBOL_02545	COG COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains	NA
UHGV-1436399_43	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA