UHGV-1436516

Genome information

Genome length 38,561 bps

CDS count 57

Completeness 89.05% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1436516
vOTU ID	vOTU-035016
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0260623
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.1
Jumbo phage	No

Genome content
Genome length	38,561 bps
GC content	39.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.05%
Average CDS length	631.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1436516_1	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-1436516_2	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-1436516_2	UniRef90	UniRef90_UPI00051BCD84	Holliday junction resolvase RecU	NA
UHGV-1436516_2	eggNOG-mapper	1232453.BAIF02000010_gene3342	Recombination protein U	NA
UHGV-1436516_2	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-1436516_2	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-1436516_3	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-1436516_3	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1436516_3	UniRef90	UniRef90_D7GXC3	DNA or RNA helicases of superfamily II	NA
UHGV-1436516_3	eggNOG-mapper	1449050.JNLE01000003_gene3908	Type III restriction protein res subunit	NA
UHGV-1436516_3	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-1436516_3	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1436516_3	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1436516_3	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1436516_3	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-1436516_5	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1436516_5	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1436516_5	UniRef90	UniRef90_UPI000408AAB9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1436516_5	eggNOG-mapper	1122173.AXVL01000060_gene390	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1436516_5	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1436516_5	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1436516_5	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1436516_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1436516_5	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1436516_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1436516_6	PHROG	phrog_17284	NA	unknown function
UHGV-1436516_6	UniRef90	UniRef90_A0A379CK09	Cytosine-specific methyltransferase	NA
UHGV-1436516_6	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-1436516_6	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1436516_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1436516_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1436516_8	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1436516_8	UniRef90	UniRef90_R6MZ51	DNA polymerase elongation subunit (Family B)	NA
UHGV-1436516_8	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-1436516_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-1436516_8	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1436516_8	Structural annotation	PF04404, PF08490, MF_04010, NF004416	NA	NA
UHGV-1436516_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1436516_10	UniRef90	UniRef90_A0A1C6L0E5	Putative phage-type endonuclease	NA
UHGV-1436516_10	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-1436516_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1436516_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1436516_10	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-1436516_13	Structural annotation	PF05037, NF005674	NA	NA
UHGV-1436516_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1436516_16	UniRef90	UniRef90_R6PFX4	Putative phage reductase	NA
UHGV-1436516_16	eggNOG-mapper	272563.CD630_09300	NA	NA
UHGV-1436516_16	PADLOC	SspD_00001	SspD	SSP
UHGV-1436516_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1436516_16	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1436516_20	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1436516_20	eggNOG-mapper	504553.F4MIM8_9CAUD	NA	NA
UHGV-1436516_20	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1436516_20	Structural annotation	PF18909	NA	NA
UHGV-1436516_24	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-1436516_25	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1436516_25	UniRef90	UniRef90_A0A1C0AE21	DNA primase	NA
UHGV-1436516_25	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-1436516_25	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1436516_25	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1436516_25	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-1436516_26	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1436516_26	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1436516_26	UniRef90	UniRef90_A0A1C0AG55	DNA primase	NA
UHGV-1436516_26	eggNOG-mapper	862517.HMPREF9225_1259	Phage plasmid primase, P4 family	NA
UHGV-1436516_26	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1436516_26	Pfam	PF19263	NA	DUF5906
UHGV-1436516_26	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1436516_26	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1436516_26	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-1436516_27	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-1436516_27	eggNOG-mapper	536233.CLO_1560	DNA-packaging protein gp3	NA
UHGV-1436516_28	UniRef90	UniRef90_A0A417AV24	Transcriptional regulator	NA
UHGV-1436516_28	eggNOG-mapper	1506994.JNLQ01000005_gene3979	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1436516_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1436516_28	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-1436516_30	PHROG	phrog_4264	NA	unknown function
UHGV-1436516_35	UniRef90	UniRef90_A0A1C6L0N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1436516_35	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-1436516_35	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-1436516_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1436516_37	PHROG	phrog_95	integrase	integration and excision
UHGV-1436516_37	UniRef90	UniRef90_A0A1C6L0M1	Transposon Tn3 resolvase	NA
UHGV-1436516_37	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1436516_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1436516_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-1436516_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1436516_37	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1436516_38	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-1436516_38	Structural annotation	PF12869, MF_01959, NF009635, COG4085	NA	NA
UHGV-1436516_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1436516_39	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-1436516_39	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-1436516_39	COG	COG5410	NA	NA
UHGV-1436516_39	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1436516_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-1436516_40	UniRef90	UniRef90_A0A1C5MXM2	Phage portal protein, SPP1 family	NA
UHGV-1436516_40	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1436516_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1436516_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1436516_42	PHROG	phrog_544	major head protein	head and packaging
UHGV-1436516_42	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1436516_42	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-1436516_42	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1436516_43	UniRef90	UniRef90_D7GNV9	Phage QLRG family, putative DNA packaging	NA
UHGV-1436516_43	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-1436516_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1436516_43	Structural annotation	TIGR01560	NA	NA
UHGV-1436516_44	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1436516_46	PHROG	phrog_78	tail terminator	connector
UHGV-1436516_46	eggNOG-mapper	469596.HMPREF9488_01309	NA	NA
UHGV-1436516_46	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1436516_47	PHROG	phrog_158	major tail protein	tail
UHGV-1436516_47	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-1436516_47	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-1436516_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1436516_48	UniRef90	UniRef90_A0A1C0ADY7	NA	NA
UHGV-1436516_48	eggNOG-mapper	1121333.JMLH01000047_gene1012	NA	NA
UHGV-1436516_48	Pfam	PF16478	NA	DUF5055
UHGV-1436516_48	Structural annotation	PF16478	NA	NA
UHGV-1436516_49	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1436516_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1436516_50	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-1436516_50	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1436516_50	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1436516_51	PHROG	phrog_1194	NA	unknown function
UHGV-1436516_51	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1436516_51	Pfam	PF20458	NA	DUF6711
UHGV-1436516_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1436516_52	PHROG	phrog_13879	NA	unknown function
UHGV-1436516_52	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-1436516_52	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1436516_53	PHROG	phrog_18725	NA	unknown function
UHGV-1436516_53	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1436516_54	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-1436516_55	PHROG	phrog_4257	NA	unknown function
UHGV-1436516_55	eggNOG-mapper	592010.GCWU000182_001502	NA	NA
UHGV-1436516_56	PHROG	phrog_962	holin	lysis
UHGV-1436516_56	UniRef90	UniRef90_UPI00085C48B3	phage holin	NA
UHGV-1436516_56	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-1436516_56	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1436516_56	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1436516_56	COG	COG5546	NA	NA
UHGV-1436516_56	Structural annotation	COG5546	NA	NA
UHGV-1436516_57	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1436516_57	PHROG	phrog_4018	amidase	lysis
UHGV-1436516_57	UniRef90	UniRef90_H1PJB2	Peptidase C51 domain-containing protein	NA
UHGV-1436516_57	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-1436516_57	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1436516_57	Pfam	PF04122	ell wall binding domain 2 (CWB2)	CW_binding_2
UHGV-1436516_57	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA