UHGV-1437375

Genome information

Genome length 19,937 bps

CDS count 28

Completeness 56.56% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1437375
vOTU ID	vOTU-018400
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0145609
BioSample	SAMEA2579950
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.8
Jumbo phage	No

Genome content
Genome length	19,937 bps
GC content	29.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	97.02%
Average CDS length	693.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1437375_1	PHROG	phrog_297	holin	lysis
UHGV-1437375_1	UniRef90	UniRef90_R5KJ92	CHAP domain./Lectin C-type domain	NA
UHGV-1437375_1	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1437375_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-1437375_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1437375_1	Structural annotation	PF08460, PF05257, NF041850, COG3942	NA	NA
UHGV-1437375_2	Structural annotation	PF06946	NA	NA
UHGV-1437375_5	eggNOG-mapper	1194165.CAJF01000020_gene2963	cellulase activity	NA
UHGV-1437375_5	COG	COG3979	Chitodextrinase	NA
UHGV-1437375_8	Pfam	PF03382	NA	DUF285
UHGV-1437375_8	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1437375_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1437375_12	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-1437375_12	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-1437375_13	Structural annotation	PF20747	NA	NA
UHGV-1437375_14	KOfam	K20138	P40; flavastacin [EC:3.4.24.76]	NA
UHGV-1437375_14	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-1437375_14	eggNOG-mapper	936574.HMPREF1508_2015	Hydrolase Family 25	NA
UHGV-1437375_14	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-1437375_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1437375_14	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-1437375_15	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-1437375_15	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-1437375_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1437375_16	Pfam	PF06827	Zinc finger found in FPG and IleRS	zf-FPG_IleRS
UHGV-1437375_17	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1437375_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1437375_17	UniRef90	UniRef90_G1VXM8	PhageMin_Tail domain-containing protein	NA
UHGV-1437375_17	eggNOG-mapper	411471.SUBVAR_05860	tail tape measure protein, TP901	NA
UHGV-1437375_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1437375_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1437375_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1437375_19	PHROG	phrog_88	major tail protein	tail
UHGV-1437375_19	UniRef90	UniRef90_UPI000B58CF3F	phage tail protein	NA
UHGV-1437375_19	eggNOG-mapper	386043.lwe1231	phage tail protein	NA
UHGV-1437375_19	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1437375_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1437375_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1437375_20	eggNOG-mapper	588581.Cpap_1268	NA	NA
UHGV-1437375_20	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1437375_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1437375_21	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1437375_21	eggNOG-mapper	638301.HMPREF0444_1502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1437375_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1437375_21	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1437375_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1437375_22	eggNOG-mapper	1497679.EP56_05745	head-tail adaptor	NA
UHGV-1437375_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1437375_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1437375_23	PHROG	phrog_5223	neck protein	connector
UHGV-1437375_23	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-1437375_23	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1437375_24	PHROG	phrog_34916	tail fiber protein	tail
UHGV-1437375_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1437375_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-1437375_25	UniRef90	UniRef90_A0A1I6SHI5	Phage major capsid protein, HK97 family	NA
UHGV-1437375_25	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1437375_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1437375_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1437375_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1437375_26	KOfam	K06904	NA	NA
UHGV-1437375_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1437375_26	UniRef90	UniRef90_A0A7C6SI26	HK97 family phage prohead protease	NA
UHGV-1437375_26	eggNOG-mapper	1211817.CCAT010000007_gene1038	Caudovirus prohead serine protease	NA
UHGV-1437375_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1437375_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1437375_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1437375_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1437375_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1437375_27	UniRef90	UniRef90_UPI000A35AB3D	phage portal protein	NA
UHGV-1437375_27	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1437375_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1437375_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1437375_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1437375_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1437375_28	UniRef90	UniRef90_W9E9N7	Terminase	NA
UHGV-1437375_28	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1437375_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1437375_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1437375_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1437375_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA