UHGV-1437673

Genome information

vOTU vOTU-020114

Genome length 20,008 bps

CDS count 24

Completeness 56.98% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-1437673
vOTU ID	vOTU-020114
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0146231
BioSample	SAMN05414908
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.94
Jumbo phage	No

Genome content
Genome length	20,008 bps
GC content	57.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	94.98%
Average CDS length	794.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1437673_1	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-1437673_1	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-1437673_2	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-1437673_2	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-1437673_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1437673_3	PHROG	phrog_95	integrase	integration and excision
UHGV-1437673_3	UniRef90	UniRef90_A0A352ULE7	Recombinase family protein	NA
UHGV-1437673_3	eggNOG-mapper	1120746.CCNL01000010_gene1415	recombinase activity	NA
UHGV-1437673_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1437673_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-1437673_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1437673_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1437673_4	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-1437673_4	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-1437673_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1437673_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1437673_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1437673_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1437673_6	PHROG	phrog_435	endolysin	lysis
UHGV-1437673_6	UniRef90	UniRef90_A0A810PZ73	SPOR domain-containing protein	NA
UHGV-1437673_6	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1437673_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1437673_6	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1437673_6	Pfam	PF05036	SPOR domain	SPOR
UHGV-1437673_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1437673_6	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1437673_7	PHROG	phrog_881	holin	lysis
UHGV-1437673_7	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-1437673_7	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1437673_7	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1437673_7	Structural annotation	PF16938	NA	NA
UHGV-1437673_8	PHROG	phrog_1863	NA	unknown function
UHGV-1437673_8	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1437673_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1437673_9	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-1437673_9	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1437673_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1437673_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1437673_9	COG	COG4926	Phage-related protein	NA
UHGV-1437673_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1437673_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1437673_10	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1437673_10	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-1437673_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1437673_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1437673_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1437673_11	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-1437673_11	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-1437673_11	COG	COG5283	Phage-related tail protein	NA
UHGV-1437673_11	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1437673_14	PHROG	phrog_88	major tail protein	tail
UHGV-1437673_14	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-1437673_14	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1437673_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1437673_14	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1437673_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1437673_15	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1437673_15	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1437673_15	Structural annotation	TIGR01725	NA	NA
UHGV-1437673_16	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1437673_16	Structural annotation	PF05657	NA	NA
UHGV-1437673_17	PHROG	phrog_19734	NA	unknown function
UHGV-1437673_17	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-1437673_17	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1437673_18	PHROG	phrog_749	NA	unknown function
UHGV-1437673_18	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1437673_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1437673_19	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-1437673_19	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-1437673_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1437673_19	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1437673_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1437673_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1437673_19	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1437673_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1437673_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1437673_20	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1437673_20	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-1437673_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1437673_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1437673_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1437673_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1437673_21	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-1437673_21	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-1437673_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1437673_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1437673_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1437673_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1437673_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1437673_22	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-1437673_22	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1437673_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1437673_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1437673_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1437673_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1437673_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1437673_23	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-1437673_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1437673_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1437673_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1437673_24	PHROG	phrog_21498	NA	unknown function
UHGV-1437673_24	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-1437673_24	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1437673_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1437673_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1437673_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1437673_24	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA