UHGV-1438266

Genome information

Genome length 38,481 bps

CDS count 46

Completeness 92.98% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1438266
vOTU ID	vOTU-061516
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0260195
BioSample	SAMEA4545398
Country	Kazakhstan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.87
Jumbo phage	No

Genome content
Genome length	38,481 bps
GC content	60.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.10%
Average CDS length	789.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1438266_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1438266_1	Structural annotation	PF20622, NF033814	NA	NA
UHGV-1438266_2	PHROG	phrog_22978	NA	unknown function
UHGV-1438266_2	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-1438266_2	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1438266_2	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1438266_2	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1438266_3	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1438266_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1438266_5	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1438266_5	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1438266_6	PHROG	phrog_12105	NA	unknown function
UHGV-1438266_6	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1438266_7	PHROG	phrog_15239	NA	unknown function
UHGV-1438266_8	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1438266_8	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1438266_8	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1438266_8	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1438266_8	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1438266_9	PHROG	phrog_13908	NA	unknown function
UHGV-1438266_9	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1438266_11	KOfam	K07584	NA	NA
UHGV-1438266_11	PHROG	phrog_4478	peptidase	other
UHGV-1438266_11	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-1438266_11	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-1438266_11	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1438266_11	COG	COG2868	NA	NA
UHGV-1438266_11	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1438266_12	PHROG	phrog_156	portal protein	head and packaging
UHGV-1438266_12	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1438266_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1438266_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1438266_13	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1438266_13	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-1438266_13	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1438266_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1438266_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1438266_13	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1438266_14	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-1438266_17	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-1438266_18	PHROG	phrog_6160	NA	unknown function
UHGV-1438266_18	eggNOG-mapper	37105.F8J1D6_9CAUD	NA	NA
UHGV-1438266_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1438266_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1438266_20	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-1438266_20	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1438266_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1438266_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1438266_21	PHROG	phrog_474	phosphofructokinase	other
UHGV-1438266_21	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-1438266_21	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-1438266_21	Pfam	PF19905	NA	DUF6378
UHGV-1438266_21	Structural annotation	PF19905	NA	NA
UHGV-1438266_24	PHROG	phrog_3136	NA	unknown function
UHGV-1438266_24	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1438266_24	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1438266_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1438266_24	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1438266_29	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1438266_29	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-1438266_29	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-1438266_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1438266_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1438266_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1438266_30	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-1438266_30	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-1438266_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1438266_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1438266_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1438266_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1438266_30	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1438266_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1438266_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1438266_31	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-1438266_31	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1438266_31	Pfam	PF03837	RecT family	RecT
UHGV-1438266_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1438266_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1438266_31	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1438266_32	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-1438266_33	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1438266_33	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-1438266_33	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1438266_33	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1438266_33	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1438266_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1438266_33	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1438266_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1438266_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1438266_38	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1438266_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1438266_40	eggNOG-mapper	1131462.DCF50_p2449	Bacterial Ig-like domain 2	NA
UHGV-1438266_40	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-1438266_40	COG	COG5492	NA	NA
UHGV-1438266_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1438266_42	UniRef90	UniRef90_A0A1C5PSE5	Predicted transcriptional regulator	NA
UHGV-1438266_42	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1438266_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1438266_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1438266_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1438266_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1438266_44	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-1438266_44	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-1438266_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1438266_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1438266_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1438266_46	KOfam	K14059	int; integrase	NA
UHGV-1438266_46	PHROG	phrog_1	integrase	integration and excision
UHGV-1438266_46	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-1438266_46	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-1438266_46	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1438266_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1438266_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1438266_46	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA