UHGV-1438363

Genome information

vOTU vOTU-019928

Genome length 29,144 bps

CDS count 37

Completeness 69.85% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-1438363
vOTU ID	vOTU-019928
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0206522
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.8
Jumbo phage	No

Genome content
Genome length	29,144 bps
GC content	44.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.56%
Average CDS length	742.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1438363_1	PHROG	phrog_16164	NA	unknown function
UHGV-1438363_1	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-1438363_1	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-1438363_2	PHROG	phrog_22212	NA	unknown function
UHGV-1438363_2	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-1438363_2	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1438363_2	COG	COG4926	Phage-related protein	NA
UHGV-1438363_3	PHROG	phrog_1194	NA	unknown function
UHGV-1438363_3	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1438363_3	Pfam	PF20458	NA	DUF6711
UHGV-1438363_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1438363_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1438363_4	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-1438363_4	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-1438363_4	COG	COG5283	Phage-related tail protein	NA
UHGV-1438363_5	PHROG	phrog_2066	NA	unknown function
UHGV-1438363_5	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-1438363_6	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1438363_6	UniRef90	UniRef90_UPI00156E7CD5	NA	NA
UHGV-1438363_6	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-1438363_6	Pfam	PF19591	NA	DUF6096
UHGV-1438363_6	Structural annotation	PF19591	NA	NA
UHGV-1438363_7	PHROG	phrog_158	major tail protein	tail
UHGV-1438363_7	UniRef90	UniRef90_UPI00156F5797	phage tail protein	NA
UHGV-1438363_7	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1438363_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1438363_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1438363_8	PHROG	phrog_78	tail terminator	connector
UHGV-1438363_8	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-1438363_8	Structural annotation	PF05657	NA	NA
UHGV-1438363_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1438363_9	UniRef90	UniRef90_UPI001D01C150	HK97 gp10 family phage protein	NA
UHGV-1438363_9	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1438363_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1438363_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1438363_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1438363_10	PHROG	phrog_2168	NA	unknown function
UHGV-1438363_10	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1438363_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1438363_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1438363_11	UniRef90	UniRef90_UPI00156F0BDA	phage head-tail connector protein	NA
UHGV-1438363_11	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1438363_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1438363_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1438363_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-1438363_12	UniRef90	UniRef90_UPI00156DFF0E	coat protein	NA
UHGV-1438363_12	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-1438363_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1438363_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1438363_13	UniRef90	UniRef90_UPI00156EF0C7	NA	NA
UHGV-1438363_13	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1438363_13	Pfam	PF14265	NA	DUF4355
UHGV-1438363_13	Structural annotation	PF14265	NA	NA
UHGV-1438363_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1438363_15	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1438363_15	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-1438363_15	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-1438363_15	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1438363_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1438363_15	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1438363_15	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-1438363_16	UniRef90	UniRef90_A0A0A8WED4	Ribbon-helix-helix protein, copG family	NA
UHGV-1438363_16	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-1438363_16	Structural annotation	PF01402, COG4710	NA	NA
UHGV-1438363_17	PHROG	phrog_3675	NA	unknown function
UHGV-1438363_17	UniRef90	UniRef90_A0A1M7JY59	YjcQ protein	NA
UHGV-1438363_17	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-1438363_17	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1438363_17	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-1438363_18	Structural annotation	PF11344	NA	NA
UHGV-1438363_19	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-1438363_19	UniRef90	UniRef90_UPI00157127C3	minor capsid protein	NA
UHGV-1438363_19	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1438363_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1438363_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1438363_19	COG	COG2369	NA	NA
UHGV-1438363_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1438363_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-1438363_20	UniRef90	UniRef90_A0A2V2D7F4	Phage portal protein	NA
UHGV-1438363_20	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1438363_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1438363_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1438363_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1438363_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1438363_21	PHROG	phrog_10250	NA	unknown function
UHGV-1438363_21	UniRef90	UniRef90_A0A2V2D9F3	PBSX family phage terminase large subunit	NA
UHGV-1438363_21	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1438363_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1438363_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1438363_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1438363_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1438363_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1438363_22	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-1438363_22	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1438363_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1438363_22	Structural annotation	PF16677	NA	NA
UHGV-1438363_24	PHROG	phrog_9479	NA	unknown function
UHGV-1438363_24	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-1438363_24	Structural annotation	PF15529	NA	NA
UHGV-1438363_25	PHROG	phrog_8680	NA	unknown function
UHGV-1438363_25	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-1438363_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1438363_25	Pfam	PF14386	NA	DUF4417
UHGV-1438363_25	Structural annotation	PF14386	NA	NA
UHGV-1438363_27	PHROG	phrog_11237	NA	unknown function
UHGV-1438363_27	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1438363_30	PHROG	phrog_3205	NA	unknown function
UHGV-1438363_30	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-1438363_30	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-1438363_31	PHROG	phrog_8684	NA	unknown function
UHGV-1438363_31	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-1438363_31	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-1438363_31	Pfam	PF09643	YopX protein	YopX
UHGV-1438363_31	Pfam	PF04448	NA	DUF551
UHGV-1438363_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1438363_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1438363_33	UniRef90	UniRef90_A0A1C5QSA5	Superfamily II helicase and inactivated derivatives	NA
UHGV-1438363_33	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-1438363_33	Pfam	PF06048	NA	DUF927
UHGV-1438363_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1438363_33	COG	COG5519	NA	NA
UHGV-1438363_33	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1438363_34	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1438363_34	PHROG	phrog_11992	NA	unknown function
UHGV-1438363_34	UniRef90	UniRef90_A0A1C5QS34	DNA primase	NA
UHGV-1438363_34	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-1438363_34	PADLOC	drt-UG29	DRT	DRT
UHGV-1438363_34	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1438363_34	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1438363_34	Structural annotation	PF01807	NA	NA
UHGV-1438363_35	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1438363_35	UniRef90	UniRef90_A0A1C5QRV1	ERCC4 domain-containing protein	NA
UHGV-1438363_35	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-1438363_35	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1438363_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1438363_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1438363_36	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-1438363_36	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-1438363_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1438363_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1438363_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1438363_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1438363_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1438363_37	UniRef90	UniRef90_A0A1C5QRZ7	ERF superfamily	NA
UHGV-1438363_37	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-1438363_37	Pfam	PF04404	ERF superfamily	ERF
UHGV-1438363_37	COG	COG0629	Single-stranded DNA-binding protein	NA