UHGV-1438843

Genome information

vOTU vOTU-020121

Genome length 28,907 bps

CDS count 32

Completeness 68.18% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-1438843
vOTU ID	vOTU-020121
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0205194
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.98
Jumbo phage	No

Genome content
Genome length	28,907 bps
GC content	43.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.24%
Average CDS length	866.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1438843_1	eggNOG-mapper	411462.DORLON_00099	NA	NA
UHGV-1438843_2	PHROG	phrog_23452	NA	unknown function
UHGV-1438843_2	UniRef90	UniRef90_A0A564W002	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-1438843_2	eggNOG-mapper	1121115.AXVN01000073_gene2025	NA	NA
UHGV-1438843_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1438843_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1438843_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1438843_3	PHROG	phrog_670	endolysin	lysis
UHGV-1438843_3	UniRef90	UniRef90_A0A416QWS5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1438843_3	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1438843_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1438843_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1438843_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1438843_3	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-1438843_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1438843_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1438843_4	UniRef90	UniRef90_A0A317UAG4	Bro-N domain-containing protein	NA
UHGV-1438843_4	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-1438843_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1438843_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1438843_4	COG	COG3617	Prophage antirepressor	NA
UHGV-1438843_5	PHROG	phrog_199	holin	lysis
UHGV-1438843_5	UniRef90	UniRef90_A0A416QWZ9	Holin	NA
UHGV-1438843_5	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-1438843_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1438843_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1438843_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1438843_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1438843_6	Structural annotation	PF07041	NA	NA
UHGV-1438843_7	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1438843_7	PHROG	phrog_38044	NA	unknown function
UHGV-1438843_7	UniRef90	UniRef90_A0A3S5FBF2	Collagen triple helix repeat (20 copies)	NA
UHGV-1438843_7	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1438843_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1438843_7	COG	COG4926	Phage-related protein	NA
UHGV-1438843_7	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1438843_8	PHROG	phrog_1401	NA	unknown function
UHGV-1438843_8	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-1438843_8	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-1438843_8	Structural annotation	PF07761	NA	NA
UHGV-1438843_9	PHROG	phrog_1194	NA	unknown function
UHGV-1438843_9	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-1438843_9	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1438843_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1438843_10	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1438843_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1438843_10	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-1438843_10	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-1438843_10	COG	COG5412	Phage-related protein	NA
UHGV-1438843_11	PHROG	phrog_2066	NA	unknown function
UHGV-1438843_12	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-1438843_12	eggNOG-mapper	1235800.C819_00478	NA	NA
UHGV-1438843_12	Pfam	PF19591	NA	DUF6096
UHGV-1438843_12	Structural annotation	PF19591	NA	NA
UHGV-1438843_13	PHROG	phrog_158	major tail protein	tail
UHGV-1438843_13	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-1438843_13	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-1438843_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1438843_14	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-1438843_14	Structural annotation	PF05657	NA	NA
UHGV-1438843_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1438843_15	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-1438843_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1438843_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1438843_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1438843_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1438843_16	PHROG	phrog_2168	NA	unknown function
UHGV-1438843_16	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-1438843_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1438843_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1438843_17	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-1438843_17	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-1438843_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1438843_17	Structural annotation	PF05135	NA	NA
UHGV-1438843_18	PHROG	phrog_2724	NA	unknown function
UHGV-1438843_18	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-1438843_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1438843_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-1438843_18	Structural annotation	PF07498	NA	NA
UHGV-1438843_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-1438843_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-1438843_19	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-1438843_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1438843_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1438843_20	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-1438843_20	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-1438843_20	Pfam	PF14265	NA	DUF4355
UHGV-1438843_20	Structural annotation	PF14265	NA	NA
UHGV-1438843_21	Structural annotation	PF01281	NA	NA
UHGV-1438843_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1438843_23	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1438843_23	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-1438843_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1438843_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1438843_23	COG	COG2369	NA	NA
UHGV-1438843_23	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1438843_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-1438843_24	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-1438843_24	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-1438843_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1438843_24	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1438843_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1438843_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1438843_25	PHROG	phrog_10250	NA	unknown function
UHGV-1438843_25	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-1438843_25	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-1438843_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1438843_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1438843_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1438843_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1438843_26	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1438843_26	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-1438843_26	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-1438843_26	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1438843_26	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1438843_26	COG	COG5484	NA	NA
UHGV-1438843_26	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-1438843_27	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-1438843_27	PHROG	phrog_32462	NA	unknown function
UHGV-1438843_27	UniRef90	UniRef90_UPI001C02EA64	RelA/SpoT domain-containing protein	NA
UHGV-1438843_27	eggNOG-mapper	1449050.JNLE01000003_gene3897	Region found in RelA / SpoT proteins	NA
UHGV-1438843_27	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-1438843_27	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-1438843_27	Structural annotation	PF04607, TIGR04562, COG2357	NA	NA
UHGV-1438843_28	PHROG	phrog_1974	NA	unknown function
UHGV-1438843_28	UniRef90	UniRef90_A0A173WMN6	37-kD nucleoid-associated bacterial protein	NA
UHGV-1438843_28	eggNOG-mapper	1449050.JNLE01000003_gene3898	37-kD nucleoid-associated bacterial protein	NA
UHGV-1438843_28	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-1438843_28	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-1438843_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1438843_29	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-1438843_29	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-1438843_29	Structural annotation	PF02996	NA	NA
UHGV-1438843_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1438843_32	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-1438843_32	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-1438843_32	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-1438843_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1438843_32	COG	COG3561	Phage anti-repressor protein Ant	NA