UHGV-1441169

Genome information

Genome length 32,137 bps

CDS count 48

Completeness 85.92% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441169
vOTU ID	vOTU-031461
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0223452
BioSample	SAMEA2467041
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.57
Jumbo phage	No

Genome content
Genome length	32,137 bps
GC content	43.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.88%
Average CDS length	611.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441169_1	PHROG	phrog_11262	tail protein	tail
UHGV-1441169_1	UniRef90	UniRef90_A0A3R5VVM1	FGE-sulfatase domain-containing protein	NA
UHGV-1441169_1	eggNOG-mapper	537007.BLAHAN_07176	NA	NA
UHGV-1441169_1	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-1441169_1	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-1441169_2	eggNOG-mapper	411902.CLOBOL_03867	NA	NA
UHGV-1441169_3	PHROG	phrog_19280	NA	unknown function
UHGV-1441169_3	UniRef90	UniRef90_A0A3A9CCX0	NA	NA
UHGV-1441169_3	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-1441169_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1441169_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1441169_4	UniRef90	UniRef90_A0A3R6MRC7	Prophage_tail domain-containing protein	NA
UHGV-1441169_4	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-1441169_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1441169_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1441169_4	COG	COG4926	Phage-related protein	NA
UHGV-1441169_4	Structural annotation	PF14594, PF16454, TIGR01665, TIGR04319, COG4926, COG0840	NA	NA
UHGV-1441169_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1441169_5	UniRef90	UniRef90_A0A3E2TNW7	Phage tail protein	NA
UHGV-1441169_5	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-1441169_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1441169_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1441169_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-1441169_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1441169_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1441169_6	UniRef90	UniRef90_A0A3R6A218	Phage tail tape measure protein	NA
UHGV-1441169_6	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1441169_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1441169_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1441169_7	PHROG	phrog_25901	NA	unknown function
UHGV-1441169_7	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-1441169_8	PHROG	phrog_13494	NA	unknown function
UHGV-1441169_8	eggNOG-mapper	536233.CLO_2516	NA	NA
UHGV-1441169_9	PHROG	phrog_88	major tail protein	tail
UHGV-1441169_9	UniRef90	UniRef90_A0A412BAX6	Major tail protein	NA
UHGV-1441169_9	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-1441169_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1441169_9	COG	COG5492	NA	NA
UHGV-1441169_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1441169_10	PHROG	phrog_78	tail terminator	connector
UHGV-1441169_10	UniRef90	UniRef90_Q8SBP4	Gp10 protein	NA
UHGV-1441169_10	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-1441169_10	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1441169_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1441169_11	UniRef90	UniRef90_UPI00164C40CD	HK97 gp10 family phage protein	NA
UHGV-1441169_11	eggNOG-mapper	315749.Bcer98_2590	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1441169_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1441169_11	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1441169_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-1441169_12	UniRef90	UniRef90_A0A3A9CAN7	Head-tail adaptor protein	NA
UHGV-1441169_12	eggNOG-mapper	1567011.A0A0A7RUH8_9VIRU	Phage head-tail joining protein	NA
UHGV-1441169_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1441169_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1441169_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1441169_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1441169_13	UniRef90	UniRef90_A0A3R5YZ06	Phage gp6-like head-tail connector protein	NA
UHGV-1441169_13	eggNOG-mapper	394503.Ccel_2955	Phage gp6-like head-tail connector protein	NA
UHGV-1441169_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1441169_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1441169_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1441169_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-1441169_14	UniRef90	UniRef90_A0A3R5VVK8	Phage major capsid protein	NA
UHGV-1441169_14	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-1441169_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1441169_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1441169_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441169_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1441169_15	KOfam	K06904	NA	NA
UHGV-1441169_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1441169_15	UniRef90	UniRef90_A0A412BB99	HK97 family phage prohead protease	NA
UHGV-1441169_15	eggNOG-mapper	573061.Clocel_2438	Phage prohead protease, HK97 family	NA
UHGV-1441169_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1441169_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1441169_15	COG	COG3740	Phage head maturation protease	NA
UHGV-1441169_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1441169_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-1441169_16	UniRef90	UniRef90_A0A3A9C9I7	Phage portal protein	NA
UHGV-1441169_16	eggNOG-mapper	903814.ELI_3115	Phage portal protein	NA
UHGV-1441169_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1441169_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1441169_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441169_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1441169_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1441169_18	UniRef90	UniRef90_A0A3A9C975	Terminase large subunit	NA
UHGV-1441169_18	eggNOG-mapper	903814.ELI_3117	Phage Terminase	NA
UHGV-1441169_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1441169_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1441169_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1441169_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1441169_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1441169_19	UniRef90	UniRef90_A0A844E2W1	Phage terminase small subunit P27 family	NA
UHGV-1441169_19	eggNOG-mapper	903814.ELI_3118	Phage terminase, small subunit	NA
UHGV-1441169_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1441169_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1441169_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1441169_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1441169_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441169_20	UniRef90	UniRef90_C4IGS7	Gp50 protein	NA
UHGV-1441169_20	eggNOG-mapper	632245.CLP_2621	HNH endonuclease	NA
UHGV-1441169_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1441169_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1441169_21	PHROG	phrog_33232	NA	unknown function
UHGV-1441169_21	UniRef90	UniRef90_A0A3A8V214	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-1441169_21	eggNOG-mapper	471875.RUMLAC_01753	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1441169_21	Pfam	PF21748	UPF0150-like	UPF0150
UHGV-1441169_21	Pfam	PF05534	HicB family	HicB
UHGV-1441169_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1441169_21	Structural annotation	PF15919, COG1598, COG4691	NA	NA
UHGV-1441169_22	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1441169_22	UniRef90	UniRef90_A0A3A8UIM8	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1441169_22	eggNOG-mapper	471875.RUMLAC_01752	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1441169_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1441169_22	Structural annotation	COG1724	NA	NA
UHGV-1441169_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1441169_26	PHROG	phrog_15982	NA	unknown function
UHGV-1441169_26	UniRef90	UniRef90_A0A3E2TNV3	NA	NA
UHGV-1441169_26	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-1441169_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1441169_26	Pfam	PF12961	NA	DUF3850
UHGV-1441169_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1441169_26	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1441169_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1441169_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1441169_27	UniRef90	UniRef90_UPI0005E19450	site-specific DNA-methyltransferase	NA
UHGV-1441169_27	eggNOG-mapper	483215.BACFIN_05771	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1441169_27	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1441169_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1441169_27	COG	COG0863	DNA modification methylase	NA
UHGV-1441169_27	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1441169_28	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1441169_28	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1441169_28	UniRef90	UniRef90_A0A3A9C0A4	ParA family protein	NA
UHGV-1441169_28	eggNOG-mapper	411468.CLOSCI_00306	AAA domain	NA
UHGV-1441169_28	Pfam	PF13614	AAA domain	AAA_31
UHGV-1441169_28	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1441169_28	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1441169_29	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1441169_29	UniRef90	UniRef90_A0A3A9CCX7	NA	NA
UHGV-1441169_29	eggNOG-mapper	69395.JQLZ01000001_gene3346	NA	NA
UHGV-1441169_29	Pfam	PF12961	NA	DUF3850
UHGV-1441169_30	PHROG	phrog_824	NA	unknown function
UHGV-1441169_30	UniRef90	UniRef90_A0A844E2V1	VRR-NUC domain-containing protein	NA
UHGV-1441169_30	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-1441169_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1441169_34	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-1441169_34	Structural annotation	PF21578	NA	NA
UHGV-1441169_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1441169_35	PHROG	phrog_26861	NA	unknown function
UHGV-1441169_35	UniRef90	UniRef90_A0A844DYA9	Single-stranded DNA-binding protein	NA
UHGV-1441169_35	eggNOG-mapper	1235799.C818_00563	Single-strand binding protein family	NA
UHGV-1441169_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1441169_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1441169_35	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1441169_39	Structural annotation	PF16857, MF_00273	NA	NA
UHGV-1441169_40	PHROG	phrog_6058	NA	unknown function
UHGV-1441169_40	UniRef90	UniRef90_A0A6B9SRW8	Putative Xis protein	NA
UHGV-1441169_40	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-1441169_40	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1441169_41	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-1441169_41	PHROG	phrog_17284	NA	unknown function
UHGV-1441169_41	UniRef90	UniRef90_UPI00110588A7	DNA cytosine methyltransferase	NA
UHGV-1441169_41	eggNOG-mapper	742735.HMPREF9467_00858	C-5 cytosine-specific DNA methylase	NA
UHGV-1441169_41	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1441169_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1441169_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1441169_41	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1441169_42	Structural annotation	PF12643, MF_00500, COG0268	NA	NA
UHGV-1441169_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1441169_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1441169_44	UniRef90	UniRef90_A0A412BAT7	Helix-turn-helix domain-containing protein	NA
UHGV-1441169_44	eggNOG-mapper	903814.ELI_3146	DNA-binding helix-turn-helix protein	NA
UHGV-1441169_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1441169_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1441169_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1441169_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1441169_46	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1441169_46	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1441169_46	UniRef90	UniRef90_UPI00189BDAE3	helix-turn-helix domain-containing protein	NA
UHGV-1441169_46	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-1441169_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1441169_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1441169_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1441169_47	PHROG	phrog_37629	NA	unknown function
UHGV-1441169_47	eggNOG-mapper	411468.CLOSCI_01454	NA	NA
UHGV-1441169_47	Structural annotation	PF08797	NA	NA
UHGV-1441169_48	KOfam	K14059	int; integrase	NA
UHGV-1441169_48	PHROG	phrog_1	integrase	integration and excision
UHGV-1441169_48	UniRef90	UniRef90_A0A3A9C136	Site-specific integrase	NA
UHGV-1441169_48	eggNOG-mapper	1235793.C809_00531	Phage integrase family	NA
UHGV-1441169_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1441169_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1441169_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA