UHGV-1441201

Genome information

Genome length 29,010 bps

CDS count 43

Completeness 82.45% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441201
vOTU ID	vOTU-023678
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0205747
BioSample	SAMN06110115
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.75
Jumbo phage	No

Genome content
Genome length	29,010 bps
GC content	37.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	95.09%
Average CDS length	645.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441201_1	Structural annotation	PF10651	NA	NA
UHGV-1441201_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1441201_2	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-1441201_2	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1441201_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1441201_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1441201_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1441201_3	UniRef90	UniRef90_UPI000BB5198E	phage tail family protein	NA
UHGV-1441201_3	eggNOG-mapper	272623.L63101	phage tail	NA
UHGV-1441201_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1441201_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1441201_4	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-1441201_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1441201_4	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-1441201_4	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1441201_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1441201_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1441201_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1441201_6	Structural annotation	PF11836	NA	NA
UHGV-1441201_7	PHROG	phrog_88	major tail protein	tail
UHGV-1441201_7	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-1441201_7	eggNOG-mapper	411470.RUMGNA_02319	COG NOG11304 non supervised orthologous group	NA
UHGV-1441201_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1441201_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1441201_8	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-1441201_8	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1441201_8	Structural annotation	TIGR01725	NA	NA
UHGV-1441201_9	eggNOG-mapper	1123315.AUIP01000001_gene1429	NA	NA
UHGV-1441201_9	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1441201_10	PHROG	phrog_19734	NA	unknown function
UHGV-1441201_10	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-1441201_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1441201_11	PHROG	phrog_749	NA	unknown function
UHGV-1441201_11	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-1441201_11	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1441201_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1441201_12	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-1441201_12	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1441201_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1441201_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1441201_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441201_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1441201_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1441201_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1441201_13	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1441201_13	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-1441201_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1441201_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1441201_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1441201_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-1441201_14	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-1441201_14	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-1441201_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1441201_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1441201_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441201_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1441201_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1441201_15	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-1441201_15	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1441201_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1441201_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1441201_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1441201_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1441201_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1441201_16	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-1441201_16	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-1441201_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1441201_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1441201_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441201_17	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-1441201_17	eggNOG-mapper	1123315.AUIP01000014_gene1945	HNH endonuclease	NA
UHGV-1441201_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1441201_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1441201_18	Structural annotation	TIGR01636	NA	NA
UHGV-1441201_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1441201_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1441201_21	PHROG	phrog_824	NA	unknown function
UHGV-1441201_21	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1441201_21	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1441201_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1441201_21	Structural annotation	PF08774	NA	NA
UHGV-1441201_22	PHROG	phrog_24518	NA	unknown function
UHGV-1441201_22	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1441201_24	PHROG	phrog_25754	NA	unknown function
UHGV-1441201_24	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-1441201_24	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-1441201_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441201_26	UniRef90	UniRef90_R6QZD0	HNH endonuclease	NA
UHGV-1441201_26	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-1441201_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1441201_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1441201_28	PHROG	phrog_15609	NA	unknown function
UHGV-1441201_28	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-1441201_28	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-1441201_28	Structural annotation	PF11300, NF038070	NA	NA
UHGV-1441201_29	PHROG	phrog_8470	NA	unknown function
UHGV-1441201_29	UniRef90	UniRef90_A0A1I4ZKY0	PcfJ-like protein	NA
UHGV-1441201_29	eggNOG-mapper	397291.C804_06548	PcfJ-like protein	NA
UHGV-1441201_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1441201_29	Structural annotation	PF14284	NA	NA
UHGV-1441201_30	PHROG	phrog_36399	NA	unknown function
UHGV-1441201_34	Structural annotation	COG1862	NA	NA
UHGV-1441201_35	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-1441201_36	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-1441201_36	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-1441201_36	Pfam	PF05339	NA	DUF739
UHGV-1441201_36	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1441201_36	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1441201_37	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1441201_37	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-1441201_37	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-1441201_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1441201_37	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1441201_38	PHROG	phrog_1914	NA	unknown function
UHGV-1441201_38	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1441201_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1441201_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1441201_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1441201_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1441201_39	PHROG	phrog_1847	NA	unknown function
UHGV-1441201_39	UniRef90	UniRef90_U2Q2K4	T5orf172 domain-containing protein	NA
UHGV-1441201_39	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-1441201_39	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-1441201_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1441201_39	Structural annotation	PF13250, NF041454	NA	NA
UHGV-1441201_40	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1441201_40	UniRef90	UniRef90_A0A7X2NEB3	Addiction module toxin, HicA family	NA
UHGV-1441201_40	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1441201_40	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1441201_40	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1441201_40	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1441201_41	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1441201_41	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1441201_41	UniRef90	UniRef90_A0A1E7S2B4	HicB-like domain-containing protein	NA
UHGV-1441201_41	eggNOG-mapper	903814.ELI_3151	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1441201_41	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1441201_41	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1441201_41	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1441201_42	KOfam	K14059	int; integrase	NA
UHGV-1441201_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1441201_42	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-1441201_42	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1441201_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1441201_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1441201_42	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA