UHGV-1441366

Genome information

Genome length 28,849 bps

CDS count 37

Completeness 76.63% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441366
vOTU ID	vOTU-025261
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0204899
BioSample	SAMN02333972
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.27
Jumbo phage	No

Genome content
Genome length	28,849 bps
GC content	35.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.27%
Average CDS length	705.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441366_1	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441366_1	UniRef90	UniRef90_A0A350BXL9	HNH endonuclease	NA
UHGV-1441366_1	eggNOG-mapper	1125712.HMPREF1316_2376	HNH nucleases	NA
UHGV-1441366_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1441366_3	Structural annotation	PF07429, MF_01002, NF002752, COG1819	NA	NA
UHGV-1441366_7	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441366_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1441366_17	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1441366_17	PHROG	phrog_20388	endolysin	lysis
UHGV-1441366_17	UniRef90	UniRef90_A0A1I6KLZ8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1441366_17	eggNOG-mapper	1408311.JNJM01000036_gene43	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1441366_17	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1441366_17	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1441366_17	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1441366_17	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1441366_17	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-1441366_18	PHROG	phrog_881	holin	lysis
UHGV-1441366_18	UniRef90	UniRef90_A0A843HKU1	Phage holin	NA
UHGV-1441366_18	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1441366_18	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1441366_18	Structural annotation	PF16938	NA	NA
UHGV-1441366_21	PHROG	phrog_3279	tail fiber protein	tail
UHGV-1441366_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1441366_22	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-1441366_22	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1441366_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1441366_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1441366_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1441366_22	COG	COG4926	Phage-related protein	NA
UHGV-1441366_22	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-1441366_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1441366_23	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1441366_23	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-1441366_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1441366_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1441366_24	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1441366_24	eggNOG-mapper	521003.COLINT_02352	nuclear chromosome segregation	NA
UHGV-1441366_24	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1441366_24	COG	COG5412	Phage-related protein	NA
UHGV-1441366_25	PHROG	phrog_3656	tail assembly chaperone	tail
UHGV-1441366_27	PHROG	phrog_117	major tail protein	tail
UHGV-1441366_27	UniRef90	UniRef90_A0A1V8RI47	Phage major tail protein	NA
UHGV-1441366_27	COG	COG5492	NA	NA
UHGV-1441366_27	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1441366_29	PHROG	phrog_387	neck protein	connector
UHGV-1441366_30	PHROG	phrog_501	head closure Hc1	connector
UHGV-1441366_30	eggNOG-mapper	1120979.ATVB01000026_gene855	NA	NA
UHGV-1441366_30	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1441366_31	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1441366_31	eggNOG-mapper	1120979.ATVB01000026_gene856	NA	NA
UHGV-1441366_31	Structural annotation	TIGR02215	NA	NA
UHGV-1441366_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-1441366_33	UniRef90	UniRef90_UPI001C561054	phage major capsid protein	NA
UHGV-1441366_33	eggNOG-mapper	1120979.ATVB01000026_gene858	Phage capsid family	NA
UHGV-1441366_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441366_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1441366_34	KOfam	K06904	NA	NA
UHGV-1441366_34	PHROG	phrog_3244	head maturation protease	head and packaging
UHGV-1441366_34	UniRef90	UniRef90_UPI001D08D6A9	HK97 family phage prohead protease	NA
UHGV-1441366_34	eggNOG-mapper	1120979.ATVB01000025_gene822	Caudovirus prohead serine protease	NA
UHGV-1441366_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1441366_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1441366_34	COG	COG3740	Phage head maturation protease	NA
UHGV-1441366_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1441366_35	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1441366_35	UniRef90	UniRef90_A0A3B8Y131	Phage portal protein	NA
UHGV-1441366_35	eggNOG-mapper	714083.JH370377_gene1329	Phage portal protein	NA
UHGV-1441366_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1441366_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1441366_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441366_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1441366_36	UniRef90	UniRef90_U1SCV6	Putative phage terminase, large subunit	NA
UHGV-1441366_36	eggNOG-mapper	1120979.ATVB01000025_gene824	Terminase	NA
UHGV-1441366_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1441366_36	Structural annotation	PF03354, PF20441, MF_04146, TIGR01547, COG4626	NA	NA