UHGV-1441812

Genome information

Genome length 29,065 bps

CDS count 38

Completeness 72.71% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441812
vOTU ID	vOTU-025265
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0206045
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.05
Jumbo phage	No

Genome content
Genome length	29,065 bps
GC content	45.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	97.50%
Average CDS length	752.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441812_1	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-1441812_2	PHROG	phrog_24368	NA	unknown function
UHGV-1441812_2	eggNOG-mapper	1235792.C808_00071	NA	NA
UHGV-1441812_3	PHROG	phrog_17021	NA	unknown function
UHGV-1441812_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1441812_4	PHROG	phrog_15982	NA	unknown function
UHGV-1441812_4	UniRef90	UniRef90_A5ZRX0	ParB domain-containing protein	NA
UHGV-1441812_4	eggNOG-mapper	411459.RUMOBE_01748	ParB-like nuclease domain	NA
UHGV-1441812_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1441812_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1441812_4	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-1441812_6	PHROG	phrog_1315	NA	unknown function
UHGV-1441812_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1441812_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1441812_8	UniRef90	UniRef90_A0A174MF26	Single-stranded DNA-binding protein	NA
UHGV-1441812_8	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-1441812_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1441812_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1441812_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1441812_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1441812_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1441812_10	PHROG	phrog_1558	NA	unknown function
UHGV-1441812_10	UniRef90	UniRef90_A0A0H3N6U8	Sigma70_r4_2 domain-containing protein	NA
UHGV-1441812_10	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-1441812_10	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-1441812_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441812_11	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-1441812_11	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-1441812_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1441812_12	UniRef90	UniRef90_A5ZRW0	Phage terminase, small subunit, P27 family	NA
UHGV-1441812_12	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-1441812_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1441812_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1441812_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1441812_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1441812_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1441812_13	UniRef90	UniRef90_A5ZRV9	Putative phage terminase, large subunit	NA
UHGV-1441812_13	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-1441812_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1441812_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1441812_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1441812_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1441812_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-1441812_14	UniRef90	UniRef90_A5ZRV7	Phage portal protein, HK97 family	NA
UHGV-1441812_14	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-1441812_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1441812_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1441812_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441812_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1441812_15	PHROG	phrog_5929	portal protein	head and packaging
UHGV-1441812_15	UniRef90	UniRef90_W4Q4Z9	Phage portal protein	NA
UHGV-1441812_15	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-1441812_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441812_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1441812_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1441812_16	UniRef90	UniRef90_A0A174M8P6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1441812_16	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-1441812_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1441812_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1441812_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1441812_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1441812_17	UniRef90	UniRef90_A0A174MCH2	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441812_17	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441812_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1441812_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1441812_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1441812_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1441812_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1441812_18	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-1441812_18	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-1441812_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1441812_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1441812_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1441812_19	UniRef90	UniRef90_A0A174MCN9	Bacteriophage head-tail adaptor	NA
UHGV-1441812_19	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-1441812_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1441812_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1441812_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1441812_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1441812_20	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-1441812_20	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-1441812_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1441812_20	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1441812_21	PHROG	phrog_78	tail terminator	connector
UHGV-1441812_21	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-1441812_21	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1441812_22	PHROG	phrog_88	major tail protein	tail
UHGV-1441812_22	UniRef90	UniRef90_A0A174MD18	Phage major tail protein, phi13 family	NA
UHGV-1441812_22	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-1441812_22	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1441812_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1441812_22	COG	COG5492	NA	NA
UHGV-1441812_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1441812_23	PHROG	phrog_13494	NA	unknown function
UHGV-1441812_23	UniRef90	UniRef90_B1BUA8	Gp12 protein	NA
UHGV-1441812_23	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-1441812_23	Structural annotation	PF16462	NA	NA
UHGV-1441812_24	PHROG	phrog_25901	NA	unknown function
UHGV-1441812_24	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-1441812_25	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1441812_25	UniRef90	UniRef90_A5ZRU7	Phage tail tape measure protein, TP901 family	NA
UHGV-1441812_25	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-1441812_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1441812_25	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1441812_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1441812_25	COG	COG5283	Phage-related tail protein	NA
UHGV-1441812_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1441812_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1441812_26	UniRef90	UniRef90_A0A174MA27	Phage-related protein	NA
UHGV-1441812_26	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-1441812_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-1441812_26	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-1441812_27	PHROG	phrog_18110	NA	unknown function
UHGV-1441812_27	UniRef90	UniRef90_A5ZRU5	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1441812_27	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-1441812_27	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1441812_27	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1441812_27	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1441812_27	COG	COG4926	Phage-related protein	NA
UHGV-1441812_28	PHROG	phrog_372	tail protein	tail
UHGV-1441812_28	UniRef90	UniRef90_UPI00189CACB2	NA	NA
UHGV-1441812_28	eggNOG-mapper	411459.RUMOBE_01722	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1441812_28	Pfam	PF05895	NA	DUF859
UHGV-1441812_28	COG	COG4675	Phage tail collar domain	NA
UHGV-1441812_28	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1441812_29	PHROG	phrog_16573	NA	unknown function
UHGV-1441812_29	UniRef90	UniRef90_A5ZRU3	BppU_N domain-containing protein	NA
UHGV-1441812_29	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-1441812_29	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1441812_29	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-1441812_30	PHROG	phrog_17147	NA	unknown function
UHGV-1441812_30	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-1441812_32	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1441812_32	UniRef90	UniRef90_A0A3D2D981	Reverse transcriptase domain-containing protein	NA
UHGV-1441812_32	eggNOG-mapper	411459.RUMOBE_01719	reverse transcriptase	NA
UHGV-1441812_32	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1441812_34	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-1441812_35	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-1441812_36	PHROG	phrog_199	holin	lysis
UHGV-1441812_36	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-1441812_36	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-1441812_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1441812_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1441812_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1441812_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1441812_37	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1441812_37	PHROG	phrog_5182	endolysin	lysis
UHGV-1441812_37	UniRef90	UniRef90_A0A412EME0	Peptidoglycan-binding protein	NA
UHGV-1441812_37	eggNOG-mapper	411470.RUMGNA_00255	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1441812_37	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1441812_37	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1441812_37	COG	COG1388	LysM repeat	NA
UHGV-1441812_37	Structural annotation	PF08230, PF01832, PF10030, NF038016, TIGR02594, COG1705, COG4322	NA	NA
UHGV-1441812_38	PHROG	phrog_33061	NA	unknown function
UHGV-1441812_38	eggNOG-mapper	411459.RUMOBE_01712	NA	NA