UHGV-1441836

Genome information

vOTU vOTU-071990

Genome length 53,642 bps

CDS count 92

Completeness 90.87% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441836
vOTU ID	vOTU-071990
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0318939
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.92
Jumbo phage	No

Genome content
Genome length	53,642 bps
GC content	38.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	86.75%
Average CDS length	510.13 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441836_2	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1441836_2	UniRef90	UniRef90_F7JKF7	ORF6N domain-containing protein	NA
UHGV-1441836_2	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-1441836_2	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1441836_2	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-1441836_3	PHROG	phrog_1233	NA	unknown function
UHGV-1441836_3	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-1441836_3	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-1441836_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1441836_9	PHROG	phrog_31631	NA	unknown function
UHGV-1441836_13	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1441836_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-1441836_14	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-1441836_14	eggNOG-mapper	1236504.HMPREF2132_11120	NA	NA
UHGV-1441836_14	Pfam	PF11753	NA	DUF3310
UHGV-1441836_14	Structural annotation	PF11753	NA	NA
UHGV-1441836_16	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1441836_16	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1441836_18	Structural annotation	PF04466	NA	NA
UHGV-1441836_20	UniRef90	UniRef90_A0A8D9PG29	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1441836_21	PHROG	phrog_25639	NA	unknown function
UHGV-1441836_21	eggNOG-mapper	585501.HMPREF6123_0841	NA	NA
UHGV-1441836_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1441836_25	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-1441836_25	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-1441836_25	COG	COG5410	NA	NA
UHGV-1441836_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1441836_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1441836_26	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1441836_26	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-1441836_26	Pfam	PF07374	NA	DUF1492
UHGV-1441836_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1441836_26	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1441836_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1441836_27	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-1441836_27	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1441836_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1441836_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1441836_28	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1441836_28	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-1441836_28	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-1441836_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1441836_28	COG	COG2369	NA	NA
UHGV-1441836_28	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1441836_29	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-1441836_30	PHROG	phrog_909	major head protein	head and packaging
UHGV-1441836_30	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-1441836_30	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-1441836_31	PHROG	phrog_29	major head protein	head and packaging
UHGV-1441836_31	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-1441836_31	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-1441836_31	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1441836_31	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1441836_32	Structural annotation	PF21169	NA	NA
UHGV-1441836_33	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1441836_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1441836_34	PHROG	phrog_1048	NA	unknown function
UHGV-1441836_34	UniRef90	UniRef90_A0A352P8A0	NA	NA
UHGV-1441836_34	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1441836_34	Pfam	PF11195	NA	DUF2829
UHGV-1441836_34	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1441836_34	Structural annotation	PF11195	NA	NA
UHGV-1441836_35	PHROG	phrog_4105	NA	unknown function
UHGV-1441836_35	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1441836_36	PHROG	phrog_1129	holin	lysis
UHGV-1441836_36	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-1441836_36	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1441836_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1441836_36	Structural annotation	PF06946	NA	NA
UHGV-1441836_37	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1441836_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1441836_38	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-1441836_38	AcrCatalog	cluster_24841	NA	NA
UHGV-1441836_39	Structural annotation	PF05657	NA	NA
UHGV-1441836_40	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-1441836_40	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1441836_41	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1441836_43	KOfam	K07273	acm; lysozyme	NA
UHGV-1441836_43	PHROG	phrog_291	endolysin	lysis
UHGV-1441836_43	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-1441836_43	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-1441836_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1441836_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1441836_43	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-1441836_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1441836_44	UniRef90	UniRef90_R6DYC9	Phage-related protein-like protein	NA
UHGV-1441836_44	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1441836_44	COG	COG1511	NA	NA
UHGV-1441836_45	PHROG	phrog_1194	NA	unknown function
UHGV-1441836_45	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-1441836_45	Pfam	PF20458	NA	DUF6711
UHGV-1441836_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1441836_46	PHROG	phrog_6616	tail protein	tail
UHGV-1441836_46	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-1441836_46	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-1441836_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1441836_47	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-1441836_47	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-1441836_48	PHROG	phrog_5302	tail protein	tail
UHGV-1441836_48	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-1441836_48	eggNOG-mapper	428125.CLOLEP_01426	NA	NA
UHGV-1441836_48	Structural annotation	COG1262	NA	NA
UHGV-1441836_49	PHROG	phrog_20201	NA	unknown function
UHGV-1441836_50	UniRef90	UniRef90_A0A349YRM6	XkdX family protein	NA
UHGV-1441836_50	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1441836_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1441836_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1441836_51	PHROG	phrog_806	NA	unknown function
UHGV-1441836_51	Pfam	PF11611	NA	DUF4352
UHGV-1441836_51	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1441836_53	PHROG	phrog_3845	NA	unknown function
UHGV-1441836_53	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-1441836_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1441836_54	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1441836_54	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-1441836_54	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-1441836_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1441836_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1441836_54	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1441836_55	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-1441836_55	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-1441836_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1441836_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1441836_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1441836_59	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1441836_59	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1441836_59	UniRef90	UniRef90_UPI001BBFD8A7	Phage antirepressor KilAC domain-containing protein	NA
UHGV-1441836_59	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-1441836_59	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1441836_59	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1441836_59	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1441836_59	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1441836_60	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-1441836_60	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1441836_63	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1441836_63	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1441836_63	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-1441836_63	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-1441836_63	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1441836_63	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1441836_64	PHROG	phrog_2164	NA	unknown function
UHGV-1441836_64	eggNOG-mapper	745310.G432_12285	NA	NA
UHGV-1441836_66	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1441836_66	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1441836_66	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-1441836_66	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-1441836_66	Pfam	PF03837	RecT family	RecT
UHGV-1441836_66	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1441836_66	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1441836_66	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1441836_67	PHROG	phrog_25456	NA	unknown function
UHGV-1441836_68	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1441836_68	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1441836_68	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-1441836_68	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1441836_68	dbAPIS	APIS058	NA	NA
UHGV-1441836_68	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1441836_68	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1441836_70	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1441836_70	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1441836_70	UniRef90	UniRef90_A0A1Y4IMA8	Single-stranded DNA-binding protein	NA
UHGV-1441836_70	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1441836_70	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1441836_70	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1441836_70	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1441836_70	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1441836_70	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1441836_71	PHROG	phrog_20593	NA	unknown function
UHGV-1441836_72	PHROG	phrog_19106	NA	unknown function
UHGV-1441836_72	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-1441836_72	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1441836_72	Structural annotation	TIGR01453	NA	NA
UHGV-1441836_73	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1441836_74	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-1441836_74	eggNOG-mapper	742767.HMPREF9456_00520	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-1441836_74	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-1441836_74	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-1441836_74	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-1441836_75	Structural annotation	PF17388	NA	NA
UHGV-1441836_76	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1441836_76	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-1441836_76	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-1441836_76	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1441836_76	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1441836_77	PHROG	phrog_9804	NA	unknown function
UHGV-1441836_77	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-1441836_77	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-1441836_77	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1441836_77	Structural annotation	PF11417	NA	NA
UHGV-1441836_82	PHROG	phrog_22292	NA	unknown function
UHGV-1441836_84	PHROG	phrog_8684	NA	unknown function
UHGV-1441836_84	UniRef90	UniRef90_A0A412RQU3	YopX domain-containing protein	NA
UHGV-1441836_84	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-1441836_84	Pfam	PF09643	YopX protein	YopX
UHGV-1441836_84	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1441836_85	PHROG	phrog_10714	NA	unknown function
UHGV-1441836_87	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1441836_87	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1441836_87	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-1441836_87	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-1441836_87	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1441836_87	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1441836_87	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1441836_87	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1441836_90	PHROG	phrog_17284	NA	unknown function
UHGV-1441836_90	UniRef90	UniRef90_A0A8D9UIK6	Cytosine specific methyltransferase	NA
UHGV-1441836_90	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-1441836_90	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-1441836_90	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1441836_90	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1441836_91	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1441836_91	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-1441836_91	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-1441836_91	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1441836_91	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1441836_91	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1441836_91	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-1441836_92	KOfam	K14059	int; integrase	NA
UHGV-1441836_92	PHROG	phrog_1	integrase	integration and excision
UHGV-1441836_92	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-1441836_92	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-1441836_92	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1441836_92	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1441836_92	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1441836_92	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1441836_92	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA