UHGV-1441945

Genome information

Genome length 20,242 bps

CDS count 33

Completeness 57.04% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-1441945
vOTU ID	vOTU-035101
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0148075
BioSample	SAMEA2152443
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.5
Jumbo phage	No

Genome content
Genome length	20,242 bps
GC content	28.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	93.03%
Average CDS length	573.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1441945_1	PHROG	phrog_1066	NA	unknown function
UHGV-1441945_1	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-1441945_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1441945_2	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-1441945_2	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1441945_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1441945_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1441945_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1441945_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1441945_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1441945_3	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-1441945_3	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1441945_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1441945_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1441945_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1441945_4	KOfam	K06904	NA	NA
UHGV-1441945_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1441945_4	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-1441945_4	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-1441945_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1441945_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1441945_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1441945_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1441945_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1441945_5	UniRef90	UniRef90_A0A8J8M8F5	Phage major capsid protein	NA
UHGV-1441945_5	eggNOG-mapper	293826.Amet_2414	Phage capsid family	NA
UHGV-1441945_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1441945_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1441945_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1441945_6	PHROG	phrog_5223	neck protein	connector
UHGV-1441945_6	UniRef90	UniRef90_UPI0017869A34	head-tail connector protein	NA
UHGV-1441945_6	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1441945_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1441945_7	eggNOG-mapper	272626.lin2574	head-tail adaptor	NA
UHGV-1441945_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1441945_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1441945_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1441945_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1441945_8	UniRef90	UniRef90_A0A559U366	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1441945_8	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-1441945_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1441945_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1441945_9	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-1441945_9	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-1441945_9	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1441945_10	PHROG	phrog_88	major tail protein	tail
UHGV-1441945_10	UniRef90	UniRef90_UPI001CBE6475	phage tail protein	NA
UHGV-1441945_10	eggNOG-mapper	1469948.JPNB01000001_gene698	phage major tail protein, phi13 family	NA
UHGV-1441945_10	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-1441945_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1441945_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1441945_11	PHROG	phrog_709	NA	unknown function
UHGV-1441945_11	Structural annotation	PF11836	NA	NA
UHGV-1441945_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1441945_13	UniRef90	UniRef90_S4H4X8	Phage tail tape measure protein, TP901 family	NA
UHGV-1441945_13	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1441945_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1441945_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1441945_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1441945_15	UniRef90	UniRef90_UPI0005E966BF	Arc family DNA-binding protein	NA
UHGV-1441945_15	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-1441945_16	Structural annotation	PF12441, NF041793, COG4710	NA	NA
UHGV-1441945_18	PHROG	phrog_15609	NA	unknown function
UHGV-1441945_18	UniRef90	UniRef90_UPI0002888CEC	NA	NA
UHGV-1441945_18	eggNOG-mapper	545243.BAEV01000033_gene586	NA	NA
UHGV-1441945_18	Pfam	PF11300	NA	DUF3102
UHGV-1441945_18	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1441945_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1441945_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1441945_19	UniRef90	UniRef90_R7ITQ6	Bro-N domain-containing protein	NA
UHGV-1441945_19	eggNOG-mapper	397288.C806_04963	Phage antirepressor protein KilAC domain	NA
UHGV-1441945_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1441945_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1441945_19	COG	COG3617	Prophage antirepressor	NA
UHGV-1441945_19	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1441945_20	PHROG	phrog_13564	minor tail protein	tail
UHGV-1441945_20	UniRef90	UniRef90_R6EKZ3	Putative phage protein	NA
UHGV-1441945_20	eggNOG-mapper	1469948.JPNB01000001_gene703	NA	NA
UHGV-1441945_20	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-1441945_20	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1441945_21	PHROG	phrog_7064	tail protein	tail
UHGV-1441945_21	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-1441945_21	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-1441945_24	PHROG	phrog_937	hemolysin	other
UHGV-1441945_24	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-1441945_25	Structural annotation	PF16938	NA	NA
UHGV-1441945_26	PHROG	phrog_918	NA	unknown function
UHGV-1441945_26	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-1441945_26	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-1441945_26	Pfam	PF19791	NA	DUF6275
UHGV-1441945_26	Structural annotation	PF19791	NA	NA
UHGV-1441945_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1441945_28	PHROG	phrog_3088	amidase	lysis
UHGV-1441945_28	UniRef90	UniRef90_A0A1Q6JUS1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1441945_28	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1441945_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1441945_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1441945_28	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1441945_31	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1441945_31	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-1441945_33	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1441945_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1441945_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1441945_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA