UHGV-1442074

Genome information

Genome length 37,511 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9660

Prediction confidence Confident

Genome information
Genome ID	UHGV-1442074
vOTU ID	vOTU-013171
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0254528
BioSample	SAMEA2784493
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9660
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.07
Jumbo phage	No

Genome content
Genome length	37,511 bps
GC content	29.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.94%
Average CDS length	582.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1442074_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1442074_1	PHROG	phrog_1493	endolysin	lysis
UHGV-1442074_1	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-1442074_1	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-1442074_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1442074_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1442074_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1442074_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-1442074_2	Structural annotation	PF16938	NA	NA
UHGV-1442074_5	UniRef90	UniRef90_A0A850MP49	SEC-C domain-containing protein	NA
UHGV-1442074_5	eggNOG-mapper	1347369.CCAD010000012_gene2398	SEC-C motif	NA
UHGV-1442074_5	Pfam	PF13975	gag-polyprotein putative aspartyl protease	gag-asp_proteas
UHGV-1442074_5	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-1442074_5	COG	COG3012	NA	NA
UHGV-1442074_5	Structural annotation	PF13650, TIGR03698, COG5550	NA	NA
UHGV-1442074_6	UniRef90	UniRef90_A0A1J5JFV4	NA	NA
UHGV-1442074_6	Structural annotation	PF18929	NA	NA
UHGV-1442074_7	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-1442074_7	PHROG	phrog_1493	endolysin	lysis
UHGV-1442074_7	UniRef90	UniRef90_K1TXM5	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-1442074_7	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-1442074_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1442074_7	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1442074_7	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1442074_7	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-1442074_8	Structural annotation	PF16938	NA	NA
UHGV-1442074_9	UniRef90	UniRef90_A0A5M9I3H9	Branched-chain amino acid ABC transporter permease	NA
UHGV-1442074_9	eggNOG-mapper	665950.HMPREF1025_02515	NA	NA
UHGV-1442074_10	PHROG	phrog_372	tail protein	tail
UHGV-1442074_10	UniRef90	UniRef90_UPI001D093B76	NA	NA
UHGV-1442074_10	eggNOG-mapper	873448.STRPO_0075	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1442074_10	Pfam	PF05895	NA	DUF859
UHGV-1442074_10	COG	COG4675	Phage tail collar domain	NA
UHGV-1442074_10	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG3401	NA	NA
UHGV-1442074_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1442074_11	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-1442074_11	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1442074_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1442074_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1442074_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1442074_13	PHROG	phrog_1084	NA	unknown function
UHGV-1442074_13	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-1442074_13	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-1442074_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1442074_14	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-1442074_14	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-1442074_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1442074_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1442074_14	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1442074_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1442074_15	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1442074_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1442074_15	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1442074_16	PHROG	phrog_2115	tail protein	tail
UHGV-1442074_16	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-1442074_16	Structural annotation	PF11836	NA	NA
UHGV-1442074_18	PHROG	phrog_88	major tail protein	tail
UHGV-1442074_18	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-1442074_18	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-1442074_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1442074_19	PHROG	phrog_78	tail terminator	connector
UHGV-1442074_19	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-1442074_19	Structural annotation	PF05657	NA	NA
UHGV-1442074_20	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-1442074_20	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-1442074_20	Structural annotation	TIGR01725	NA	NA
UHGV-1442074_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-1442074_21	UniRef90	UniRef90_F8J165	Putative head-tail adaptor	NA
UHGV-1442074_21	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-1442074_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1442074_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1442074_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1442074_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1442074_22	UniRef90	UniRef90_A0A371AT65	Phage gp6-like head-tail connector protein	NA
UHGV-1442074_22	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-1442074_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1442074_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1442074_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-1442074_23	UniRef90	UniRef90_UPI0018A9C330	phage major capsid protein	NA
UHGV-1442074_23	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-1442074_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1442074_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1442074_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1442074_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1442074_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1442074_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1442074_24	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1442074_24	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-1442074_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1442074_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1442074_24	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1442074_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1442074_25	UniRef90	UniRef90_A0A1Q6M1W2	Phage portal protein	NA
UHGV-1442074_25	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-1442074_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1442074_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1442074_25	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1442074_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1442074_26	UniRef90	UniRef90_A0A1Q6M1W9	Terminase	NA
UHGV-1442074_26	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-1442074_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1442074_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1442074_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1442074_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1442074_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1442074_27	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-1442074_27	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-1442074_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1442074_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1442074_28	UniRef90	UniRef90_A0A1Q6M1V2	HNHc domain-containing protein	NA
UHGV-1442074_28	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-1442074_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1442074_31	Pfam	PF16591	Helical bimodular sensor domain	HBM
UHGV-1442074_31	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-1442074_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1442074_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1442074_33	UniRef90	UniRef90_R6H754	NA	NA
UHGV-1442074_33	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-1442074_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1442074_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1442074_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1442074_34	PHROG	phrog_3886	NA	unknown function
UHGV-1442074_34	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-1442074_35	KOfam	K03744	lemA; LemA protein	NA
UHGV-1442074_35	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1442074_35	UniRef90	UniRef90_A0A1Q6M2C0	LemA family protein	NA
UHGV-1442074_35	eggNOG-mapper	1497679.EP56_05670	LemA family	NA
UHGV-1442074_35	Pfam	PF04011	LemA family	LemA
UHGV-1442074_35	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1442074_35	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1442074_41	PHROG	phrog_1828	NA	unknown function
UHGV-1442074_47	Structural annotation	PF11506, MF_00720, NF004948, COG3390	NA	NA
UHGV-1442074_48	Structural annotation	PF02699, TIGR00739, COG1862	NA	NA
UHGV-1442074_49	UniRef90	UniRef90_A0A1Q6M1X1	HTH_11 domain-containing protein	NA
UHGV-1442074_49	Pfam	PF08279	HTH domain	HTH_11
UHGV-1442074_49	Structural annotation	PF21715, TIGR00122	NA	NA
UHGV-1442074_51	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1442074_51	eggNOG-mapper	240302.BN982_00004	Replication initiation and membrane attachment	NA
UHGV-1442074_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1442074_51	Structural annotation	PF04492, TIGR01610, COG5529	NA	NA
UHGV-1442074_54	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-1442074_55	UniRef90	UniRef90_A0A1Q6M1W5	HTH cro/C1-type domain-containing protein	NA
UHGV-1442074_55	eggNOG-mapper	1215915.BN193_09250	NA	NA
UHGV-1442074_55	Pfam	PF05339	NA	DUF739
UHGV-1442074_55	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1442074_55	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1442074_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1442074_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1442074_56	UniRef90	UniRef90_A0A1Q6M1Z8	HTH cro/C1-type domain-containing protein	NA
UHGV-1442074_56	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-1442074_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442074_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1442074_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1442074_56	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1442074_57	eggNOG-mapper	469381.Dpep_1324	PFAM Endonuclease Exonuclease phosphatase	NA
UHGV-1442074_57	COG	COG2374	Predicted extracellular nuclease	NA
UHGV-1442074_58	KOfam	K14059	int; integrase	NA
UHGV-1442074_58	PHROG	phrog_1	integrase	integration and excision
UHGV-1442074_58	UniRef90	UniRef90_A0A7U9STR7	Putative prophage phiRv2 integrase	NA
UHGV-1442074_58	eggNOG-mapper	428126.CLOSPI_00819	Phage integrase family	NA
UHGV-1442074_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1442074_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1442074_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1442074_58	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA