UHGV-1442657

Genome information

Genome length 38,450 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1442657
vOTU ID	vOTU-064356
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0260049
BioSample	SAMEA2338658
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.28
Jumbo phage	No

Genome content
Genome length	38,450 bps
GC content	52.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.34%
Average CDS length	552.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1442657_1	PHROG	phrog_400	tail protein	tail
UHGV-1442657_1	UniRef90	UniRef90_A0A848ERW5	Phage_lysozyme2 domain-containing protein	NA
UHGV-1442657_1	eggNOG-mapper	568816.Acin_1331	NLP P60 protein	NA
UHGV-1442657_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1442657_1	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-1442657_2	PHROG	phrog_579	NA	unknown function
UHGV-1442657_2	UniRef90	UniRef90_UPI000417DD77	NA	NA
UHGV-1442657_2	eggNOG-mapper	568816.Acin_1961	NA	NA
UHGV-1442657_2	Pfam	PF10844	NA	DUF2577
UHGV-1442657_2	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-1442657_3	PHROG	phrog_120	baseplate protein	tail
UHGV-1442657_3	UniRef90	UniRef90_UPI0008EA0D5A	NA	NA
UHGV-1442657_3	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-1442657_3	Pfam	PF10934	NA	DUF2634
UHGV-1442657_3	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-1442657_4	PHROG	phrog_6	baseplate protein	tail
UHGV-1442657_4	UniRef90	UniRef90_UPI0008F32837	baseplate J/gp47 family protein	NA
UHGV-1442657_4	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-1442657_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1442657_4	COG	COG3299	NA	NA
UHGV-1442657_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1442657_5	PHROG	phrog_521	tail protein	tail
UHGV-1442657_5	UniRef90	UniRef90_UPI0008E678DD	NA	NA
UHGV-1442657_5	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-1442657_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1442657_5	COG	COG3778	NA	NA
UHGV-1442657_5	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-1442657_6	PHROG	phrog_5717	tail protein	tail
UHGV-1442657_6	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-1442657_6	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-1442657_6	COG	COG4675	Phage tail collar domain	NA
UHGV-1442657_6	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-1442657_7	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-1442657_9	PHROG	phrog_24267	NA	unknown function
UHGV-1442657_9	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-1442657_9	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-1442657_9	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1442657_10	KOfam	K14059	int; integrase	NA
UHGV-1442657_10	PHROG	phrog_1	integrase	integration and excision
UHGV-1442657_10	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-1442657_10	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-1442657_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1442657_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1442657_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1442657_13	PHROG	phrog_5867	endolysin	lysis
UHGV-1442657_13	UniRef90	UniRef90_UPI001C433E67	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1442657_13	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1442657_13	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1442657_13	Structural annotation	MF_04111	NA	NA
UHGV-1442657_14	PHROG	phrog_10797	NA	unknown function
UHGV-1442657_14	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-1442657_14	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-1442657_14	Structural annotation	PF06531	NA	NA
UHGV-1442657_19	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-1442657_19	PHROG	phrog_2104	NA	unknown function
UHGV-1442657_19	UniRef90	UniRef90_UPI0008F42D49	helix-turn-helix domain-containing protein	NA
UHGV-1442657_19	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-1442657_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442657_19	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1442657_19	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-1442657_20	KOfam	K14059	int; integrase	NA
UHGV-1442657_20	PHROG	phrog_1	integrase	integration and excision
UHGV-1442657_20	UniRef90	UniRef90_UPI0008E4BF44	site-specific integrase	NA
UHGV-1442657_20	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-1442657_20	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1442657_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1442657_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1442657_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1442657_22	PHROG	phrog_20886	NA	unknown function
UHGV-1442657_22	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-1442657_22	Structural annotation	PF06114	NA	NA
UHGV-1442657_23	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1442657_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1442657_23	UniRef90	UniRef90_UPI00047E223F	helix-turn-helix domain-containing protein	NA
UHGV-1442657_23	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-1442657_23	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1442657_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442657_23	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-1442657_23	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1442657_24	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1442657_24	UniRef90	UniRef90_UPI0005658318	helix-turn-helix domain-containing protein	NA
UHGV-1442657_24	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-1442657_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442657_24	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1442657_25	PHROG	phrog_7735	excisionase	integration and excision
UHGV-1442657_25	UniRef90	UniRef90_UPI0008E316C6	helix-turn-helix domain-containing protein	NA
UHGV-1442657_25	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1442657_25	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-1442657_26	UniRef90	UniRef90_UPI0008E3110F	transcriptional regulator	NA
UHGV-1442657_26	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1442657_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442657_26	Structural annotation	PF01381, PF05339, MF_00535, NF041951, COG3655, COG3093	NA	NA
UHGV-1442657_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1442657_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1442657_31	UniRef90	UniRef90_UPI0008E9D7B2	AAA family ATPase	NA
UHGV-1442657_31	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-1442657_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-1442657_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1442657_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1442657_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1442657_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1442657_32	UniRef90	UniRef90_UPI0008ECD644	recombinase RecT	NA
UHGV-1442657_32	eggNOG-mapper	666686.B1NLA3E_01105	RecT family	NA
UHGV-1442657_32	Pfam	PF03837	RecT family	RecT
UHGV-1442657_33	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1442657_33	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1442657_33	UniRef90	UniRef90_UPI001D06240E	MBL fold metallo-hydrolase	NA
UHGV-1442657_33	eggNOG-mapper	926561.KB900623_gene748	Metallo-beta-lactamase superfamily	NA
UHGV-1442657_33	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1442657_33	dbAPIS	APIS058	NA	NA
UHGV-1442657_33	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1442657_33	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1442657_36	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1442657_36	PHROG	phrog_11769	NA	unknown function
UHGV-1442657_36	UniRef90	UniRef90_UPI0008EB4872	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1442657_36	eggNOG-mapper	1035189.HMPREF9954_1960	Replication initiation and membrane attachment	NA
UHGV-1442657_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1442657_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1442657_36	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1442657_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1442657_41	PHROG	phrog_774	NA	unknown function
UHGV-1442657_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1442657_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1442657_42	UniRef90	UniRef90_UPI0008F2889A	single-stranded DNA-binding protein	NA
UHGV-1442657_42	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1442657_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1442657_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1442657_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1442657_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1442657_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1442657_43	PHROG	phrog_824	NA	unknown function
UHGV-1442657_43	UniRef90	UniRef90_UPI0008E257B7	VRR-NUC domain-containing protein	NA
UHGV-1442657_43	eggNOG-mapper	1123288.SOV_4c02500	Archaeal holliday junction resolvase (hjc)	NA
UHGV-1442657_47	PHROG	phrog_236	nucleotide kinase	other
UHGV-1442657_47	UniRef90	UniRef90_UPI001C432084	NA	NA
UHGV-1442657_47	eggNOG-mapper	1118054.CAGW01000095_gene4680	NA	NA
UHGV-1442657_47	Pfam	PF11753	NA	DUF3310
UHGV-1442657_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1442657_48	UniRef90	UniRef90_UPI001959B6F9	NA	NA
UHGV-1442657_48	eggNOG-mapper	679201.HMPREF9334_00472	NA	NA
UHGV-1442657_48	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1442657_49	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1442657_49	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1442657_49	UniRef90	UniRef90_UPI0008F3D27A	HNH endonuclease	NA
UHGV-1442657_49	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-1442657_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1442657_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1442657_50	PHROG	phrog_1066	NA	unknown function
UHGV-1442657_50	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-1442657_50	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1442657_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1442657_51	UniRef90	UniRef90_UPI0008F04707	terminase large subunit	NA
UHGV-1442657_51	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-1442657_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1442657_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1442657_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1442657_51	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1442657_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-1442657_52	UniRef90	UniRef90_UPI0008E4F720	phage portal protein	NA
UHGV-1442657_52	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1442657_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1442657_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1442657_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1442657_53	KOfam	K06904	NA	NA
UHGV-1442657_53	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1442657_53	UniRef90	UniRef90_UPI0008EE2F28	HK97 family phage prohead protease	NA
UHGV-1442657_53	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-1442657_53	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1442657_53	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1442657_53	COG	COG3740	Phage head maturation protease	NA
UHGV-1442657_53	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1442657_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-1442657_54	UniRef90	UniRef90_UPI0008E39BFA	phage major capsid protein	NA
UHGV-1442657_54	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-1442657_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1442657_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1442657_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1442657_54	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1442657_55	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1442657_55	UniRef90	UniRef90_UPI0008F4045A	head-tail connector protein	NA
UHGV-1442657_55	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-1442657_55	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1442657_55	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1442657_55	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1442657_56	PHROG	phrog_25	head closure Hc1	connector
UHGV-1442657_56	UniRef90	UniRef90_UPI0008E4FD65	phage head closure protein	NA
UHGV-1442657_56	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-1442657_56	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1442657_56	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1442657_56	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1442657_57	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1442657_57	UniRef90	UniRef90_UPI0008EBDF4A	HK97 gp10 family phage protein	NA
UHGV-1442657_57	eggNOG-mapper	293826.Amet_2418	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1442657_57	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1442657_57	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-1442657_58	PHROG	phrog_525	NA	unknown function
UHGV-1442657_58	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-1442657_58	Pfam	PF20765	NA	DUF6838
UHGV-1442657_58	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1442657_59	PHROG	phrog_1480	tail sheath	tail
UHGV-1442657_59	UniRef90	UniRef90_UPI001D0053A4	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-1442657_59	eggNOG-mapper	568816.Acin_1338	Phage tail sheath C-terminal domain	NA
UHGV-1442657_59	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1442657_59	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1442657_59	Structural annotation	PF10758, COG3497	NA	NA
UHGV-1442657_60	PHROG	phrog_365	tail protein	tail
UHGV-1442657_60	UniRef90	UniRef90_UPI0008E6ECEF	phage tail tube protein	NA
UHGV-1442657_60	eggNOG-mapper	568816.Acin_1337	Phage tail tube protein	NA
UHGV-1442657_60	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1442657_60	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-1442657_61	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1442657_61	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-1442657_61	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1442657_61	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1442657_61	Structural annotation	PF08890	NA	NA
UHGV-1442657_63	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1442657_63	UniRef90	UniRef90_UPI0008E2892B	phage tail tape measure protein	NA
UHGV-1442657_63	eggNOG-mapper	568816.Acin_1333	Phage-related minor tail protein	NA
UHGV-1442657_63	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1442657_63	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1442657_63	COG	COG5283	Phage-related tail protein	NA
UHGV-1442657_63	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1442657_64	PHROG	phrog_5184	NA	unknown function
UHGV-1442657_64	UniRef90	UniRef90_UPI0018973606	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1442657_64	eggNOG-mapper	568816.Acin_1963	LysM domain	NA
UHGV-1442657_64	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA