UHGV-1442692

Genome information

Genome length 20,194 bps

CDS count 26

Completeness 59.14% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-1442692
vOTU ID	vOTU-029468
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0147696
BioSample	SAMEA1906436
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.82
Jumbo phage	No

Genome content
Genome length	20,194 bps
GC content	60.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	96.67%
Average CDS length	754.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1442692_1	PHROG	phrog_4105	NA	unknown function
UHGV-1442692_1	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1442692_1	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-1442692_2	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1442692_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1442692_5	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-1442692_5	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1442692_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1442692_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1442692_5	COG	COG4926	Phage-related protein	NA
UHGV-1442692_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1442692_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1442692_6	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1442692_6	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-1442692_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-1442692_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1442692_7	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1442692_7	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-1442692_7	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1442692_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1442692_7	Structural annotation	PF20155	NA	NA
UHGV-1442692_10	PHROG	phrog_88	major tail protein	tail
UHGV-1442692_10	UniRef90	UniRef90_N9WHZ7	Phi13 family phage major tail protein	NA
UHGV-1442692_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1442692_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1442692_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1442692_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1442692_11	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-1442692_11	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1442692_11	Structural annotation	TIGR01725	NA	NA
UHGV-1442692_12	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1442692_12	Structural annotation	PF05657	NA	NA
UHGV-1442692_13	PHROG	phrog_19734	NA	unknown function
UHGV-1442692_13	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-1442692_13	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-1442692_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1442692_14	PHROG	phrog_749	NA	unknown function
UHGV-1442692_14	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-1442692_14	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1442692_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1442692_15	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-1442692_15	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1442692_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1442692_15	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1442692_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1442692_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1442692_15	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1442692_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1442692_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1442692_16	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1442692_16	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-1442692_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1442692_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1442692_16	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1442692_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1442692_17	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-1442692_17	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1442692_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1442692_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1442692_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1442692_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1442692_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1442692_18	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-1442692_18	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1442692_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1442692_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1442692_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1442692_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1442692_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1442692_19	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-1442692_19	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-1442692_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1442692_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1442692_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1442692_20	PHROG	phrog_21498	NA	unknown function
UHGV-1442692_20	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-1442692_20	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1442692_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1442692_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1442692_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1442692_20	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-1442692_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1442692_21	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-1442692_21	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-1442692_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1442692_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1442692_22	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-1442692_22	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-1442692_22	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1442692_22	Structural annotation	PF14205	NA	NA
UHGV-1442692_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1442692_23	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-1442692_23	Structural annotation	PF01446	NA	NA