UHGV-1442735

Genome information

Genome length 37,565 bps

CDS count 58

Completeness 92.81% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-1442735
vOTU ID	vOTU-061466
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0254880
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.16
Jumbo phage	No

Genome content
Genome length	37,565 bps
GC content	52.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.24%
Average CDS length	581.74 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1442735_1	KOfam	K14059	int; integrase	NA
UHGV-1442735_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1442735_1	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-1442735_1	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1442735_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1442735_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1442735_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1442735_2	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1442735_2	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-1442735_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442735_2	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1442735_6	PHROG	phrog_888	NA	unknown function
UHGV-1442735_6	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-1442735_6	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-1442735_6	Pfam	PF14471	NA	DUF4428
UHGV-1442735_6	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1442735_6	Structural annotation	PF15947, PF14471	NA	NA
UHGV-1442735_9	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-1442735_9	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-1442735_10	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-1442735_10	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1442735_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1442735_11	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-1442735_11	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1442735_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1442735_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1442735_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1442735_19	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1442735_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1442735_21	PHROG	phrog_7566	NA	unknown function
UHGV-1442735_21	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1442735_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1442735_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1442735_22	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-1442735_22	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1442735_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1442735_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1442735_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1442735_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1442735_22	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1442735_23	PHROG	phrog_6969	NA	unknown function
UHGV-1442735_23	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1442735_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1442735_23	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-1442735_24	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1442735_24	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1442735_24	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-1442735_24	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-1442735_24	Pfam	PF13614	AAA domain	AAA_31
UHGV-1442735_24	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1442735_24	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1442735_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1442735_25	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1442735_25	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-1442735_25	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-1442735_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1442735_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1442735_25	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-1442735_26	Structural annotation	PF04545	NA	NA
UHGV-1442735_27	PHROG	phrog_13999	NA	unknown function
UHGV-1442735_27	eggNOG-mapper	1391428.V5KT07_9CAUD	NA	NA
UHGV-1442735_30	PHROG	phrog_21498	NA	unknown function
UHGV-1442735_30	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-1442735_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1442735_30	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1442735_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1442735_31	UniRef90	UniRef90_A0A2A7AM49	HNH endonuclease	NA
UHGV-1442735_31	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1442735_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1442735_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1442735_32	PHROG	phrog_13845	NA	unknown function
UHGV-1442735_32	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-1442735_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1442735_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1442735_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1442735_33	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-1442735_33	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-1442735_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1442735_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1442735_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1442735_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-1442735_34	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-1442735_34	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-1442735_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1442735_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1442735_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1442735_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1442735_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1442735_35	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-1442735_35	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-1442735_35	eggNOG-mapper	1121866.AUGK01000006_gene879	Clp protease	NA
UHGV-1442735_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1442735_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1442735_35	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1442735_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-1442735_36	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-1442735_36	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1442735_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1442735_36	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1442735_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1442735_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1442735_36	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1442735_37	PHROG	phrog_749	NA	unknown function
UHGV-1442735_37	UniRef90	UniRef90_UPI0016630012	phage gp6-like head-tail connector protein	NA
UHGV-1442735_37	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1442735_38	PHROG	phrog_19734	NA	unknown function
UHGV-1442735_38	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-1442735_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1442735_39	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-1442735_39	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1442735_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1442735_40	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1442735_40	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-1442735_40	Structural annotation	TIGR01725	NA	NA
UHGV-1442735_41	PHROG	phrog_88	major tail protein	tail
UHGV-1442735_41	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-1442735_41	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-1442735_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1442735_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1442735_43	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-1442735_43	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-1442735_43	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-1442735_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1442735_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1442735_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1442735_43	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1442735_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1442735_44	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1442735_44	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-1442735_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-1442735_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1442735_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1442735_45	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-1442735_45	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1442735_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1442735_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1442735_45	COG	COG4926	Phage-related protein	NA
UHGV-1442735_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1442735_48	KOfam	K07273	acm; lysozyme	NA
UHGV-1442735_48	PHROG	phrog_291	endolysin	lysis
UHGV-1442735_48	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-1442735_48	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1442735_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1442735_48	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1442735_48	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1442735_49	PHROG	phrog_1863	NA	unknown function
UHGV-1442735_49	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-1442735_50	PHROG	phrog_263	holin	lysis
UHGV-1442735_50	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-1442735_50	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-1442735_50	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1442735_50	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1442735_50	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-1442735_51	PHROG	phrog_918	NA	unknown function
UHGV-1442735_51	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-1442735_51	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-1442735_51	Pfam	PF19791	NA	DUF6275
UHGV-1442735_51	Structural annotation	PF19791	NA	NA
UHGV-1442735_52	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-1442735_54	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-1442735_54	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-1442735_54	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-1442735_55	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-1442735_55	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-1442735_55	Structural annotation	COG4068	NA	NA
UHGV-1442735_57	PHROG	phrog_21718	NA	unknown function