UHGV-1442766

Genome information

Genome length 32,212 bps

CDS count 50

Completeness 96.12% (high-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-1442766
vOTU ID	vOTU-008975
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0223913
BioSample	SAMEA2153852
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.65
Jumbo phage	No

Genome content
Genome length	32,212 bps
GC content	50.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.39%
Average CDS length	591.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1442766_1	PHROG	phrog_38417	hyaluronidase	other
UHGV-1442766_1	UniRef90	UniRef90_A0A1Q6RLA5	Mtd_N domain-containing protein	NA
UHGV-1442766_1	eggNOG-mapper	691965.D4P7B8_9CAUD	NA	NA
UHGV-1442766_1	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1442766_2	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-1442766_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1442766_6	PHROG	phrog_13564	minor tail protein	tail
UHGV-1442766_6	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-1442766_6	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-1442766_7	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1442766_7	UniRef90	UniRef90_A0A7C6ZFM0	Phage tail tape measure protein (Fragment)	NA
UHGV-1442766_7	eggNOG-mapper	698769.JFBD01000002_gene2732	Phage tail tape measure protein	NA
UHGV-1442766_7	COG	COG3953	SLT domain protein	NA
UHGV-1442766_7	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1442766_10	eggNOG-mapper	397288.C806_04870	phage major tail protein, phi13 family	NA
UHGV-1442766_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1442766_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1442766_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1442766_11	Structural annotation	TIGR01725	NA	NA
UHGV-1442766_12	Structural annotation	PF05657, NF040576, COG5003	NA	NA
UHGV-1442766_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1442766_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1442766_15	UniRef90	UniRef90_A0A3D2D5M2	Phage major capsid protein	NA
UHGV-1442766_15	eggNOG-mapper	198094.BA_3784	Phage capsid family	NA
UHGV-1442766_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1442766_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1442766_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1442766_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1442766_16	KOfam	K06904	NA	NA
UHGV-1442766_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1442766_16	UniRef90	UniRef90_A0A3D2D6S6	HK97 family phage prohead protease	NA
UHGV-1442766_16	eggNOG-mapper	293826.Amet_2413	Phage prohead protease, HK97 family	NA
UHGV-1442766_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1442766_16	COG	COG3740	Phage head maturation protease	NA
UHGV-1442766_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1442766_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-1442766_17	UniRef90	UniRef90_A0A0U1L0X0	Portal protein, phage associated	NA
UHGV-1442766_17	eggNOG-mapper	1123288.SOV_2c03640	Phage portal protein	NA
UHGV-1442766_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1442766_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1442766_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1442766_18	Structural annotation	PF18059, NF041911	NA	NA
UHGV-1442766_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1442766_19	UniRef90	UniRef90_A0A3D2D5D4	Terminase	NA
UHGV-1442766_19	eggNOG-mapper	1123288.SOV_2c03650	Phage Terminase	NA
UHGV-1442766_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1442766_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1442766_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1442766_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1442766_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1442766_21	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1442766_21	UniRef90	UniRef90_A0A1Q6RLA1	HNH domain-containing protein	NA
UHGV-1442766_21	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-1442766_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1442766_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1442766_21	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1442766_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1442766_22	UniRef90	UniRef90_UPI001BEB79E1	helix-turn-helix domain-containing protein	NA
UHGV-1442766_22	eggNOG-mapper	1416760.AYMS01000142_gene622	transposase activity	NA
UHGV-1442766_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1442766_24	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1442766_24	UniRef90	UniRef90_A0A1Q6RL78	NA	NA
UHGV-1442766_24	eggNOG-mapper	764291.STRUR_0857	NA	NA
UHGV-1442766_24	Pfam	PF12961	NA	DUF3850
UHGV-1442766_24	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1442766_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1442766_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1442766_25	UniRef90	UniRef90_A0A1Q6RL79	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1442766_25	eggNOG-mapper	641526.ADIWIN_2664	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1442766_25	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-1442766_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1442766_25	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-1442766_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1442766_26	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-1442766_26	Structural annotation	PF21578	NA	NA
UHGV-1442766_27	UniRef90	UniRef90_A0A3D2D6W4	HTH cro/C1-type domain-containing protein	NA
UHGV-1442766_28	PHROG	phrog_24386	NA	unknown function
UHGV-1442766_28	UniRef90	UniRef90_UPI001897C7B4	NA	NA
UHGV-1442766_28	eggNOG-mapper	411460.RUMTOR_01374	COG NOG28949 non supervised orthologous group	NA
UHGV-1442766_28	Pfam	PF19789	NA	DUF6273
UHGV-1442766_28	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-1442766_28	Structural annotation	PF19789, TIGR01689, COG0241	NA	NA
UHGV-1442766_29	PHROG	phrog_24368	NA	unknown function
UHGV-1442766_30	PHROG	phrog_1485	NA	unknown function
UHGV-1442766_30	UniRef90	UniRef90_A0A2N7WEV6	NA	NA
UHGV-1442766_30	eggNOG-mapper	1291050.JAGE01000001_gene471	NA	NA
UHGV-1442766_30	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1442766_32	PHROG	phrog_5984	NA	unknown function
UHGV-1442766_32	eggNOG-mapper	1235798.C817_04575	NA	NA
UHGV-1442766_32	Structural annotation	PF19561	NA	NA
UHGV-1442766_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1442766_33	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1442766_33	UniRef90	UniRef90_A0A1Q6RLA2	Methyltransferase	NA
UHGV-1442766_33	eggNOG-mapper	1434319.W5RV19_9CAUD	helicase activity	NA
UHGV-1442766_33	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1442766_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1442766_33	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1442766_37	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1442766_37	NCBIFam	NF041793.1	ORF56 family plasmid copy control protein	NA
UHGV-1442766_38	KOfam	K07497	K07497; putative transposase	NA
UHGV-1442766_38	PHROG	phrog_8463	transposase	integration and excision
UHGV-1442766_38	UniRef90	UniRef90_A0A355V3R3	IS481 family transposase	NA
UHGV-1442766_38	eggNOG-mapper	1123307.KB904367_gene1244	Transposase and inactivated derivatives	NA
UHGV-1442766_38	Pfam	PF00665	Integrase core domain	rve
UHGV-1442766_38	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1442766_38	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1442766_38	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-1442766_39	Structural annotation	PF10723, NF040976	NA	NA
UHGV-1442766_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1442766_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1442766_43	UniRef90	UniRef90_R6GUP4	Helix-turn-helix domain protein	NA
UHGV-1442766_43	eggNOG-mapper	663278.Ethha_0519	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1442766_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1442766_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1442766_43	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1442766_44	UniRef90	UniRef90_R6GZ93	Single-stranded-DNA-specific exonuclease RecJ	NA
UHGV-1442766_44	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-1442766_44	COG	COG0514	Superfamily II DNA helicase RecQ	NA
UHGV-1442766_44	Structural annotation	PF08797	NA	NA
UHGV-1442766_46	PHROG	phrog_13712	holin	lysis
UHGV-1442766_46	eggNOG-mapper	1203606.HMPREF1526_00252	NA	NA
UHGV-1442766_46	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1442766_48	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1442766_48	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1442766_48	UniRef90	UniRef90_R6GXU6	Reverse transcriptase domain-containing protein	NA
UHGV-1442766_48	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1442766_48	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1442766_48	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1442766_48	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1442766_48	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1442766_49	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1442766_49	UniRef90	UniRef90_A0A6N7VN03	Four helix bundle protein	NA
UHGV-1442766_49	Structural annotation	PF05635, NF008911	NA	NA