UHGV-1444160

Genome information

Genome length 58,928 bps

CDS count 64

Completeness 69.52% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-1444160
vOTU ID	vOTU-035147
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0329749
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.46
Jumbo phage	No

Genome content
Genome length	58,928 bps
GC content	56.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.45%
Average CDS length	863.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1444160_2	PHROG	phrog_474	phosphofructokinase	other
UHGV-1444160_2	eggNOG-mapper	33771.Q8V6R1_9VIRU	NA	NA
UHGV-1444160_2	Pfam	PF19905	NA	DUF6378
UHGV-1444160_6	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1444160_6	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1444160_6	UniRef90	UniRef90_A0A2H5ZS08	Flavin-dependent thymidylate synthase	NA
UHGV-1444160_6	eggNOG-mapper	525268.HMPREF0308_2049	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1444160_6	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1444160_6	Pfam	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
UHGV-1444160_6	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1444160_6	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1444160_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1444160_8	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1444160_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1444160_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1444160_9	UniRef90	UniRef90_A0A3G3LWS3	Terminase large subunit	NA
UHGV-1444160_9	eggNOG-mapper	384848.A7IY98_9CAUD	Phage Terminase	NA
UHGV-1444160_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1444160_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1444160_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1444160_10	PHROG	phrog_104	portal protein	head and packaging
UHGV-1444160_10	UniRef90	UniRef90_A0A4Y6EL66	Portal protein	NA
UHGV-1444160_10	eggNOG-mapper	384848.A7IY99_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1444160_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1444160_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1444160_11	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1444160_11	UniRef90	UniRef90_A0A4Y6EKG2	Capsid maturation protease	NA
UHGV-1444160_11	eggNOG-mapper	384848.A7IYA0_9CAUD	NA	NA
UHGV-1444160_12	PHROG	phrog_26148	NA	unknown function
UHGV-1444160_13	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1444160_13	UniRef90	UniRef90_A7IYA2	Putative minor capsid protein	NA
UHGV-1444160_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-1444160_14	UniRef90	UniRef90_A0A4Y6EKH1	Major capsid protein	NA
UHGV-1444160_14	eggNOG-mapper	384848.A7IYA3_9CAUD	Phage major capsid protein E	NA
UHGV-1444160_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1444160_14	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1444160_15	PHROG	phrog_6587	head-tail connector protein	connector
UHGV-1444160_16	PHROG	phrog_20694	NA	unknown function
UHGV-1444160_16	UniRef90	UniRef90_A7IYA5	Gp34	NA
UHGV-1444160_17	PHROG	phrog_19417	NA	unknown function
UHGV-1444160_17	UniRef90	UniRef90_A7IYA6	Gp35	NA
UHGV-1444160_19	PHROG	phrog_123	tail terminator	connector
UHGV-1444160_20	PHROG	phrog_476	major tail protein	tail
UHGV-1444160_20	UniRef90	UniRef90_A0A4Y6EL77	Major tail protein	NA
UHGV-1444160_20	eggNOG-mapper	384848.A7IYA9_9CAUD	peptidase activity	NA
UHGV-1444160_21	eggNOG-mapper	436229.JOEH01000022_gene726	Spherulation-specific family 4	NA
UHGV-1444160_21	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1444160_21	COG	COG1122	Energy-coupling factor transporter ATP-binding protein EcfA2	NA
UHGV-1444160_22	PHROG	phrog_26941	tail protein	tail
UHGV-1444160_22	eggNOG-mapper	384848.A7IYB1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1444160_23	PHROG	phrog_8963	tail assembly chaperone	tail
UHGV-1444160_23	UniRef90	UniRef90_A7IYB4	Gp43	NA
UHGV-1444160_24	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-1444160_25	PHROG	phrog_6090	tail length tape measure protein	tail
UHGV-1444160_25	UniRef90	UniRef90_A7IYB6	Putative tail measure protein	NA
UHGV-1444160_25	eggNOG-mapper	1348662.CARG_02640	heme binding	NA
UHGV-1444160_25	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1444160_25	COG	COG3953	SLT domain protein	NA
UHGV-1444160_26	PHROG	phrog_106	minor tail protein	tail
UHGV-1444160_26	UniRef90	UniRef90_A7IYB7	Gp46	NA
UHGV-1444160_26	eggNOG-mapper	384848.A7IYB7_9CAUD	NA	NA
UHGV-1444160_27	PHROG	phrog_110	minor tail protein	tail
UHGV-1444160_27	UniRef90	UniRef90_A0A4Y6EKH5	Minor tail protein	NA
UHGV-1444160_27	eggNOG-mapper	384848.A7IYB8_9CAUD	NA	NA
UHGV-1444160_27	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1444160_28	PHROG	phrog_19576	NA	unknown function
UHGV-1444160_28	UniRef90	UniRef90_A7IYB9	Gp48	NA
UHGV-1444160_28	eggNOG-mapper	384848.A7IYB9_9CAUD	NA	NA
UHGV-1444160_29	PHROG	phrog_8672	NA	unknown function
UHGV-1444160_29	UniRef90	UniRef90_A7IYC0	Gp49	NA
UHGV-1444160_30	PHROG	phrog_20965	NA	unknown function
UHGV-1444160_30	UniRef90	UniRef90_A7IYC1	Gp50	NA
UHGV-1444160_31	PHROG	phrog_12076	NA	unknown function
UHGV-1444160_31	eggNOG-mapper	1121353.H924_07135	NA	NA
UHGV-1444160_32	KOfam	K03791	K03791; putative chitinase	NA
UHGV-1444160_32	PHROG	phrog_1519	endolysin	lysis
UHGV-1444160_32	UniRef90	UniRef90_UPI00031AECA3	C39 family peptidase	NA
UHGV-1444160_32	eggNOG-mapper	945712.CULC22_01932	chitinase	NA
UHGV-1444160_32	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1444160_32	COG	COG3179	Chitinase, GH19 family	NA
UHGV-1444160_33	PHROG	phrog_3428	holin	lysis
UHGV-1444160_34	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1444160_34	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1444160_34	UniRef90	UniRef90_A0A4Y6EMH8	DNA primase/polymerase	NA
UHGV-1444160_34	eggNOG-mapper	384848.A7IYC5_9CAUD	hydrolase activity	NA
UHGV-1444160_34	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1444160_34	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1444160_34	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1444160_37	PHROG	phrog_1981	NA	unknown function
UHGV-1444160_37	UniRef90	UniRef90_A7IYC8	Gp57	NA
UHGV-1444160_37	eggNOG-mapper	384848.A7IYC8_9CAUD	nucleic acid binding	NA
UHGV-1444160_38	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1444160_38	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1444160_38	UniRef90	UniRef90_A0A4Y6EL94	DNA-directed DNA polymerase	NA
UHGV-1444160_38	eggNOG-mapper	319522.G8EJR5_9CAUD	Bacterial DNA polymerase III alpha subunit	NA
UHGV-1444160_38	Pfam	PF02811	PHP domain	PHP
UHGV-1444160_38	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1444160_38	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1444160_38	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1444160_38	Structural annotation	PF07733, PF17657, PF02811, PF14579, PF01336, MF_01902, NF004226, COG0587	NA	NA
UHGV-1444160_40	PHROG	phrog_9460	methyltransferase	other
UHGV-1444160_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1444160_41	UniRef90	UniRef90_A0A4Y6EMI8	AAA-ATPase	NA
UHGV-1444160_41	eggNOG-mapper	384848.A7IYD7_9CAUD	AAA domain	NA
UHGV-1444160_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-1444160_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG2874	NA	NA
UHGV-1444160_44	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1444160_44	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1444160_44	UniRef90	UniRef90_A7IYE0	Gp73	NA
UHGV-1444160_44	eggNOG-mapper	384848.A7IYE0_9CAUD	NA	NA
UHGV-1444160_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1444160_44	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-1444160_45	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1444160_45	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1444160_45	UniRef90	UniRef90_A7IYE2	Putative helicase	NA
UHGV-1444160_45	eggNOG-mapper	384848.A7IYE2_9CAUD	helicase activity	NA
UHGV-1444160_45	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1444160_45	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1444160_45	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1444160_46	KOfam	K00526	E1.17.4.1B, nrdB, nrdF; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]	NA
UHGV-1444160_46	PHROG	phrog_86	ribonucleoside diphosphate reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-1444160_46	UniRef90	UniRef90_A0A4Y6EMH9	Ribonucleoside-diphosphate reductase	NA
UHGV-1444160_46	eggNOG-mapper	1112217.PPL19_14704	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-1444160_46	Pfam	PF00268	Ribonucleotide reductase, small chain	Ribonuc_red_sm
UHGV-1444160_46	NCBIFam	TIGR04171.1	class 1b ribonucleoside-diphosphate reductase subunit beta	NA
UHGV-1444160_46	COG	COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	NA
UHGV-1444160_46	Structural annotation	PF00268, MF_04028, NF006576, COG0208	NA	NA
UHGV-1444160_48	KOfam	K00525	E1.17.4.1A, nrdA, nrdE; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]	NA
UHGV-1444160_48	PHROG	phrog_84	ribonucleoside-diphosphate reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-1444160_48	UniRef90	UniRef90_A0A2N9JKL3	Ribonucleoside-diphosphate reductase	NA
UHGV-1444160_48	eggNOG-mapper	1122622.ATWJ01000011_gene2070	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-1444160_48	Pfam	PF08343	Ribonucleotide reductase N-terminal	RNR_N
UHGV-1444160_48	Pfam	PF00317	Ribonucleotide reductase, all-alpha domain	Ribonuc_red_lgN
UHGV-1444160_48	Pfam	PF02867	Ribonucleotide reductase, barrel domain	Ribonuc_red_lgC
UHGV-1444160_48	NCBIFam	TIGR04170.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA
UHGV-1444160_48	COG	COG0209	Ribonucleotide reductase alpha subunit	NA
UHGV-1444160_48	Structural annotation	PF02867, MF_04026, TIGR04170, COG0209	NA	NA
UHGV-1444160_51	PHROG	phrog_7964	NA	unknown function
UHGV-1444160_51	Structural annotation	MF_01691, NF040481	NA	NA