UHGV-1444613

Genome information

vOTU vOTU-020861

Genome length 24,894 bps

CDS count 48

Completeness 56.85% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1444613
vOTU ID	vOTU-020861
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181485
BioSample	SAMN03418273
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.73
Jumbo phage	No

Genome content
Genome length	24,894 bps
GC content	41.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	87.37%
Average CDS length	457.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1444613_1	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA
UHGV-1444613_9	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1444613_9	PHROG	phrog_30550	NA	unknown function
UHGV-1444613_9	UniRef90	UniRef90_UPI001899E49A	cell wall hydrolase	NA
UHGV-1444613_9	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-1444613_9	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1444613_9	Structural annotation	TIGR02869	NA	NA
UHGV-1444613_11	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1444613_11	UniRef90	UniRef90_A0A7C3P5B3	XRE family transcriptional regulator (Fragment)	NA
UHGV-1444613_11	eggNOG-mapper	1340434.AXVA01000007_gene5150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1444613_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1444613_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1444613_11	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-1444613_13	PHROG	phrog_6038	NA	unknown function
UHGV-1444613_15	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-1444613_17	UniRef90	UniRef90_A0A8D9PDV0	Zinc-finger double domain protein	NA
UHGV-1444613_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1444613_18	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1444613_18	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-1444613_19	PHROG	phrog_3489	NA	unknown function
UHGV-1444613_19	UniRef90	UniRef90_A0A8D9PE01	DNA-binding domain protein	NA
UHGV-1444613_19	Structural annotation	PF19157, NF002506	NA	NA
UHGV-1444613_20	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1444613_20	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-1444613_20	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-1444613_20	Pfam	PF13479	AAA domain	AAA_24
UHGV-1444613_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1444613_20	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1444613_23	PHROG	phrog_3724	NA	unknown function
UHGV-1444613_23	eggNOG-mapper	66692.ABC1367	NA	NA
UHGV-1444613_23	Pfam	PF05037	NA	DUF669
UHGV-1444613_23	Structural annotation	PF05037, NF011800	NA	NA
UHGV-1444613_24	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1444613_24	PHROG	phrog_18685	NA	unknown function
UHGV-1444613_24	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-1444613_24	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-1444613_24	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1444613_24	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1444613_24	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-1444613_24	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-1444613_24	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-1444613_25	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-1444613_25	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-1444613_26	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-1444613_26	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-1444613_26	UniRef90	UniRef90_A0A8D9UHD0	Queuosine biosynthesis protein	NA
UHGV-1444613_26	eggNOG-mapper	1064535.MELS_0627	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-1444613_26	PADLOC	QueC_00001	QueC	CBASS
UHGV-1444613_26	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-1444613_26	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-1444613_26	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-1444613_26	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-1444613_26	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-1444613_27	UniRef90	UniRef90_A0A8D9UHC6	QueF-like protein	NA
UHGV-1444613_27	Structural annotation	PF01227, MF_00818, TIGR03139, COG0780	NA	NA
UHGV-1444613_28	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-1444613_28	PHROG	phrog_4899	NA	unknown function
UHGV-1444613_28	UniRef90	UniRef90_A0A8D9PDW2	Putative vitamin uptake transporter	NA
UHGV-1444613_28	eggNOG-mapper	1236494.BAJN01000018_gene2066	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-1444613_28	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-1444613_28	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-1444613_28	COG	COG1738	NA	NA
UHGV-1444613_28	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-1444613_28	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-1444613_29	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1444613_29	UniRef90	UniRef90_A0A7C6S799	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-1444613_29	eggNOG-mapper	202752.JL53_00735	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1444613_29	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1444613_29	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1444613_29	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-1444613_30	PHROG	phrog_236	nucleotide kinase	other
UHGV-1444613_30	UniRef90	UniRef90_A0A8D9PDY1	Nucelotide kinase	NA
UHGV-1444613_30	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-1444613_30	Pfam	PF11753	NA	DUF3310
UHGV-1444613_30	Structural annotation	PF11753	NA	NA
UHGV-1444613_31	UniRef90	UniRef90_A0A8D9UH23	Queuine tRNA-ribosyltransferase	NA
UHGV-1444613_31	eggNOG-mapper	996637.SGM_5178	NA	NA
UHGV-1444613_31	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-1444613_32	KOfam	K21314	pol; T5 DNA polymerase [EC:2.7.7.7]	NA
UHGV-1444613_32	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1444613_32	UniRef90	UniRef90_A0A8D9PDS0	DNA polymerase	NA
UHGV-1444613_32	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-1444613_32	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-1444613_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1444613_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1444613_33	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1444613_33	UniRef90	UniRef90_A0A7T6ZMI4	HNHc domain-containing protein	NA
UHGV-1444613_33	eggNOG-mapper	538979.C4ML45_9CAUD	HNH endonuclease	NA
UHGV-1444613_33	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1444613_34	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-1444613_34	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1444613_34	UniRef90	UniRef90_U5PT39	DNA polymerase	NA
UHGV-1444613_34	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-1444613_34	PADLOC	drt-cluster58	DRT	DRT
UHGV-1444613_34	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1444613_34	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1444613_34	Structural annotation	PF00476, NF011541, COG0749	NA	NA
UHGV-1444613_35	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1444613_35	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1444613_35	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-1444613_35	eggNOG-mapper	1238237.CP10139811_0639	SNF2 family	NA
UHGV-1444613_35	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1444613_35	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1444613_35	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1444613_35	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1444613_35	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1444613_37	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-1444613_37	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1444613_40	PHROG	phrog_20016	NA	unknown function
UHGV-1444613_40	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1444613_40	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1444613_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1444613_41	PHROG	phrog_16490	NA	unknown function
UHGV-1444613_41	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1444613_43	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-1444613_45	UniRef90	UniRef90_A0A8D9PDZ2	Insulin receptor	NA
UHGV-1444613_47	PHROG	phrog_4105	NA	unknown function
UHGV-1444613_47	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-1444613_47	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA