UHGV-1445583

Genome information

vOTU vOTU-020572

Genome length 28,308 bps

CDS count 39

Completeness 62.18% (medium-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-1445583
vOTU ID	vOTU-020572
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0201888
BioSample	SAMN05414925
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	21
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.95
Jumbo phage	No

Genome content
Genome length	28,308 bps
GC content	50.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	85.99%
Average CDS length	627.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1445583_1	KOfam	K09475	ompC; outer membrane pore protein C	NA
UHGV-1445583_1	PHROG	phrog_410	NA	unknown function
UHGV-1445583_1	UniRef90	UniRef90_A0A0D8VWI8	Outer membrane porin protein	NA
UHGV-1445583_1	eggNOG-mapper	362663.ECP_1867	Belongs to the Gram-negative porin family	NA
UHGV-1445583_1	Pfam	PF00267	Gram-negative porin	Porin_1
UHGV-1445583_1	NCBIFam	NF007841.0	porin OmpC	NA
UHGV-1445583_1	COG	COG3203	Outer membrane porin OmpC/OmpF/PhoE	NA
UHGV-1445583_1	Structural annotation	PF00267, MF_01301, NF007841, COG3203	NA	NA
UHGV-1445583_2	PHROG	phrog_9876	holin	lysis
UHGV-1445583_2	UniRef90	UniRef90_P0A9R3	Lysis protein S homolog from lambdoid prophage DLP12	NA
UHGV-1445583_2	eggNOG-mapper	199310.c1561	Lysis protein S homolog from lambdoid prophage	NA
UHGV-1445583_2	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-1445583_2	Structural annotation	PF04971	NA	NA
UHGV-1445583_3	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1445583_3	PHROG	phrog_7	endolysin	lysis
UHGV-1445583_3	UniRef90	UniRef90_P78285	Lysozyme RrrD	NA
UHGV-1445583_3	eggNOG-mapper	414970.A5LH83_9CAUD	Phage lysozyme	NA
UHGV-1445583_3	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1445583_3	HAMAP	MF_04110	Endolysin	NA
UHGV-1445583_3	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1445583_4	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-1445583_4	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-1445583_4	UniRef90	UniRef90_P00726	Spanin, inner membrane subunit	NA
UHGV-1445583_4	eggNOG-mapper	362663.ECP_1161	Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall (By similarity)	NA
UHGV-1445583_4	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-1445583_4	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-1445583_4	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-1445583_5	PHROG	phrog_260	Bor-like outer membrane protein	other
UHGV-1445583_5	UniRef90	UniRef90_A0A0H0EQW8	Bor protein	NA
UHGV-1445583_5	eggNOG-mapper	469008.B21_00516	Bor protein	NA
UHGV-1445583_5	Pfam	PF06291	Bor protein	Lambda_Bor
UHGV-1445583_5	Structural annotation	PF06291	NA	NA
UHGV-1445583_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1445583_6	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1445583_6	UniRef90	UniRef90_A0A6D1JX09	HNH endonuclease	NA
UHGV-1445583_6	eggNOG-mapper	90371.CY43_10655	HNH endonuclease	NA
UHGV-1445583_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1445583_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1445583_6	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1445583_7	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1445583_7	UniRef90	UniRef90_A0A2A7U7F5	Phage terminase small subunit P27 family	NA
UHGV-1445583_7	eggNOG-mapper	55884.Q8SBI1_BPSF5	Phage terminase, small subunit	NA
UHGV-1445583_7	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1445583_7	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1445583_7	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1445583_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1445583_8	UniRef90	UniRef90_A0A0D8VBB7	Terminase	NA
UHGV-1445583_8	eggNOG-mapper	754331.AEME01000001_gene4280	Phage Terminase	NA
UHGV-1445583_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1445583_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1445583_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1445583_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1445583_9	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1445583_9	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-1445583_9	eggNOG-mapper	316407.4062725	NA	NA
UHGV-1445583_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-1445583_10	UniRef90	UniRef90_Q8HAD4	Sb4	NA
UHGV-1445583_10	eggNOG-mapper	1440052.EAKF1_ch0464c	Phage portal protein	NA
UHGV-1445583_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1445583_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1445583_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1445583_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1445583_11	KOfam	K06904	NA	NA
UHGV-1445583_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1445583_11	UniRef90	UniRef90_Q8HAD3	Sb5	NA
UHGV-1445583_11	eggNOG-mapper	1440052.EAKF1_ch0463c	Caudovirus prohead serine protease	NA
UHGV-1445583_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1445583_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1445583_11	COG	COG3740	Phage head maturation protease	NA
UHGV-1445583_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1445583_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1445583_12	UniRef90	UniRef90_Q8HAD2	Sb6	NA
UHGV-1445583_12	eggNOG-mapper	1225789.M1FPN2_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1445583_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1445583_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1445583_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1445583_13	PHROG	phrog_1020	NA	unknown function
UHGV-1445583_13	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-1445583_13	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-1445583_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1445583_14	UniRef90	UniRef90_A0A024L3U4	Phage DNA packaging protein	NA
UHGV-1445583_14	eggNOG-mapper	754331.AEME01000001_gene207	Phage gp6-like head-tail connector protein	NA
UHGV-1445583_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1445583_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1445583_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1445583_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-1445583_15	UniRef90	UniRef90_B7LJM4	Putative phage head-tail adaptor	NA
UHGV-1445583_15	eggNOG-mapper	754331.AEME01000001_gene208	Phage head-tail joining protein	NA
UHGV-1445583_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1445583_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1445583_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1445583_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1445583_16	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-1445583_16	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-1445583_16	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-1445583_16	Structural annotation	TIGR01725	NA	NA
UHGV-1445583_17	PHROG	phrog_209	portal protein	head and packaging
UHGV-1445583_17	UniRef90	UniRef90_A0A061KQS1	NA	NA
UHGV-1445583_17	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-1445583_17	Structural annotation	PF09646	NA	NA
UHGV-1445583_18	PHROG	phrog_208	NA	unknown function
UHGV-1445583_18	UniRef90	UniRef90_J7Q674	NA	NA
UHGV-1445583_18	eggNOG-mapper	754331.AEME01000001_gene211	NA	NA
UHGV-1445583_18	Pfam	PF10948	NA	DUF2635
UHGV-1445583_18	Structural annotation	PF10948	NA	NA
UHGV-1445583_19	PHROG	phrog_165	tail sheath	tail
UHGV-1445583_19	UniRef90	UniRef90_Q8SBH2	Tail sheath protein	NA
UHGV-1445583_19	eggNOG-mapper	66284.S5FKL0_BPSF2	Phage tail sheath protein	NA
UHGV-1445583_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1445583_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1445583_19	Structural annotation	PF10758, COG4386	NA	NA
UHGV-1445583_20	PHROG	phrog_185	tail tube protein	tail
UHGV-1445583_20	UniRef90	UniRef90_J7QME8	NA	NA
UHGV-1445583_20	eggNOG-mapper	1225789.M1FJ91_9CAUD	Phage tail tube protein	NA
UHGV-1445583_20	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-1445583_20	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-1445583_21	PHROG	phrog_166	tail protein	tail
UHGV-1445583_21	UniRef90	UniRef90_A0A3A5JV55	Phage tail assembly protein	NA
UHGV-1445583_21	eggNOG-mapper	1216966.BAUC01000041_gene2866	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-1445583_21	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-1445583_21	Structural annotation	PF10109, COG4518	NA	NA
UHGV-1445583_22	PHROG	phrog_26612	NA	unknown function
UHGV-1445583_22	UniRef90	UniRef90_Q8SBG9	Probable tape measure protein	NA
UHGV-1445583_22	eggNOG-mapper	55884.Q8SBG9_BPSF5	amidase activity	NA
UHGV-1445583_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1445583_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1445583_22	Structural annotation	TIGR01760	NA	NA
UHGV-1445583_23	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-1445583_23	UniRef90	UniRef90_B7LJN3	Tail/DNA circulation protein	NA
UHGV-1445583_23	eggNOG-mapper	1225789.M1FPN5_9CAUD	DNA circularisation protein N-terminus	NA
UHGV-1445583_23	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-1445583_23	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-1445583_24	PHROG	phrog_177	tail protein	tail
UHGV-1445583_24	UniRef90	UniRef90_E3PEH3	Putative phage tail protein	NA
UHGV-1445583_24	eggNOG-mapper	1225789.M1FN92_9CAUD	NA	NA
UHGV-1445583_24	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-1445583_24	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1445583_25	PHROG	phrog_28548	NA	unknown function
UHGV-1445583_25	UniRef90	UniRef90_A0A5F0A122	Baseplate assembly protein	NA
UHGV-1445583_25	eggNOG-mapper	1225789.M1FJ93_9CAUD	Bacteriophage Mu Gp45 protein	NA
UHGV-1445583_25	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-1445583_25	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-1445583_25	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-1445583_26	PHROG	phrog_180	tail protein	tail
UHGV-1445583_26	UniRef90	UniRef90_A0A093D1I0	Bacteriophage V tail protein	NA
UHGV-1445583_26	eggNOG-mapper	1225789.M1FPE5_9CAUD	Phage protein GP46	NA
UHGV-1445583_26	Pfam	PF07409	NA	GP46
UHGV-1445583_26	Structural annotation	PF07409, COG4381	NA	NA
UHGV-1445583_27	PHROG	phrog_6	baseplate protein	tail
UHGV-1445583_27	UniRef90	UniRef90_A0A4C4LBQ7	Baseplate_J domain-containing protein	NA
UHGV-1445583_27	eggNOG-mapper	1225789.M1FQW3_9CAUD	Baseplate J-like protein	NA
UHGV-1445583_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1445583_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1445583_28	PHROG	phrog_203	tail protein	tail
UHGV-1445583_28	UniRef90	UniRef90_UPI0009006D48	NA	NA
UHGV-1445583_28	eggNOG-mapper	55884.O22003_BPSF5	NA	NA
UHGV-1445583_28	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-1445583_28	Structural annotation	PF10076, COG3778	NA	NA
UHGV-1445583_29	PHROG	phrog_18834	NA	unknown function
UHGV-1445583_29	UniRef90	UniRef90_A0A2X1NNP3	Tail fiber protein	NA
UHGV-1445583_29	eggNOG-mapper	1225789.M1FN94_9CAUD	NA	NA
UHGV-1445583_29	Structural annotation	PF07484	NA	NA
UHGV-1445583_30	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-1445583_30	UniRef90	UniRef90_A0A4C3BDF9	Phage tail fiber assembly protein	NA
UHGV-1445583_30	eggNOG-mapper	316407.1799752	response to oxidative stress	NA
UHGV-1445583_30	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-1445583_30	Structural annotation	PF02413	NA	NA
UHGV-1445583_31	PHROG	phrog_105	tail fiber assembly	tail
UHGV-1445583_31	UniRef90	UniRef90_A0A8B5LGL2	Tail fiber assembly protein	NA
UHGV-1445583_31	eggNOG-mapper	469008.B21_00853	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-1445583_31	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-1445583_31	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-1445583_31	Structural annotation	PF02413	NA	NA
UHGV-1445583_32	KOfam	K20269	rhiB; rhizosphere induced protein	NA
UHGV-1445583_32	PHROG	phrog_523	tail collar fiber protein	tail
UHGV-1445583_32	UniRef90	UniRef90_A0A0L1BBH0	Tail fiber protein	NA
UHGV-1445583_32	eggNOG-mapper	37554.Q9MCR6_BPHK7	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1445583_32	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1445583_32	Structural annotation	COG4675	NA	NA
UHGV-1445583_33	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-1445583_33	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1445583_33	UniRef90	UniRef90_A0A0H0IWQ2	DNA invertase from prophage CP-933H	NA
UHGV-1445583_33	eggNOG-mapper	754331.AEME01000001_gene1940	Helix-turn-helix domain of resolvase	NA
UHGV-1445583_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1445583_33	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-1445583_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1445583_33	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-1445583_34	KOfam	K09968	NA	NA
UHGV-1445583_34	PHROG	phrog_5356	NA	unknown function
UHGV-1445583_34	UniRef90	UniRef90_A0A0H3MJK1	GIY-YIG domain-containing protein	NA
UHGV-1445583_34	eggNOG-mapper	155864.EDL933_0289	Cleaves both 3' and 5' ssDNA extremities of branched DNA structures	NA
UHGV-1445583_34	COG	COG3680	NA	NA
UHGV-1445583_34	Structural annotation	PF15653, TIGR01453, COG3680	NA	NA
UHGV-1445583_35	KOfam	K21906	gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator	NA
UHGV-1445583_35	PHROG	phrog_1450	NA	unknown function
UHGV-1445583_35	UniRef90	UniRef90_A0A5B7KR86	AraC family transcriptional regulator	NA
UHGV-1445583_35	eggNOG-mapper	155864.EDL933_0290	Transcriptional regulator	NA
UHGV-1445583_35	Pfam	PF00165	Bacterial regulatory helix-turn-helix proteins, AraC family	HTH_AraC
UHGV-1445583_35	COG	COG2207	AraC-type DNA-binding domain and AraC-containing proteins	NA
UHGV-1445583_36	PHROG	phrog_157	transposase	integration and excision
UHGV-1445583_36	UniRef90	UniRef90_A0A3P5DMJ7	Transposase (Identified by ISEscan HMM)	NA
UHGV-1445583_36	eggNOG-mapper	155864.EDL933_0291	Integrase core domain	NA
UHGV-1445583_36	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1445583_36	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1445583_39	UniRef90	UniRef90_UPI0019818B8A	helix-turn-helix domain-containing protein	NA
UHGV-1445583_39	eggNOG-mapper	1440052.EAKF1_ch3907c	Resolvase, N terminal domain	NA
UHGV-1445583_39	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1445583_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA