UHGV-1445584

Genome information

vOTU vOTU-021906

Genome length 28,307 bps

CDS count 41

Completeness 70.07% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1445584
vOTU ID	vOTU-021906
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0201885
BioSample	SAMN05414931
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.79
Jumbo phage	No

Genome content
Genome length	28,307 bps
GC content	48.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.51%
Average CDS length	661.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1445584_1	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1445584_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1445584_1	UniRef90	UniRef90_R6N9D9	DNA methylase family protein	NA
UHGV-1445584_1	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1445584_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1445584_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1445584_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1445584_2	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1445584_2	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1445584_2	UniRef90	UniRef90_A0A3D5LLL5	Beta sliding clamp	NA
UHGV-1445584_2	eggNOG-mapper	411471.SUBVAR_07116	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1445584_2	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1445584_2	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1445584_2	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1445584_2	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1445584_2	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1445584_2	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1445584_4	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1445584_4	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-1445584_4	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1445584_4	Pfam	PF06378	NA	DUF1071
UHGV-1445584_4	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1445584_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1445584_5	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-1445584_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1445584_5	Structural annotation	PF05772	NA	NA
UHGV-1445584_6	PHROG	phrog_7566	NA	unknown function
UHGV-1445584_6	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-1445584_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1445584_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1445584_8	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-1445584_8	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-1445584_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1445584_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1445584_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1445584_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1445584_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1445584_9	PHROG	phrog_2113	NA	unknown function
UHGV-1445584_9	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-1445584_9	eggNOG-mapper	1160721.RBI_I00213	NA	NA
UHGV-1445584_9	Structural annotation	PF21715	NA	NA
UHGV-1445584_10	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1445584_10	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-1445584_10	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1445584_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1445584_10	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1445584_12	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1445584_12	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1445584_12	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-1445584_12	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-1445584_12	Pfam	PF00692	dUTPase	dUTPase
UHGV-1445584_12	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1445584_12	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1445584_12	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1445584_15	PHROG	phrog_8684	NA	unknown function
UHGV-1445584_15	UniRef90	UniRef90_A0A355KXQ4	YopX domain-containing protein	NA
UHGV-1445584_15	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-1445584_15	Pfam	PF09643	YopX protein	YopX
UHGV-1445584_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1445584_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1445584_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1445584_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1445584_17	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1445584_17	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-1445584_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1445584_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1445584_18	eggNOG-mapper	1321786.HMPREF1992_00991	sigma factor activity	NA
UHGV-1445584_18	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1445584_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1445584_18	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1445584_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1445584_19	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1445584_19	UniRef90	UniRef90_UPI001C389DC7	NA	NA
UHGV-1445584_19	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-1445584_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1445584_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1445584_19	Pfam	PF14386	NA	DUF4417
UHGV-1445584_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1445584_19	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-1445584_20	PHROG	phrog_5057	NA	unknown function
UHGV-1445584_20	eggNOG-mapper	679200.HMPREF9333_02268	Phage integrase family	NA
UHGV-1445584_20	COG	COG2369	NA	NA
UHGV-1445584_21	UniRef90	UniRef90_F5KZP8	Conserved domain protein	NA
UHGV-1445584_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1445584_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1445584_23	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-1445584_23	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1445584_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1445584_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1445584_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1445584_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1445584_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1445584_25	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-1445584_25	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-1445584_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1445584_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1445584_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1445584_26	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1445584_26	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-1445584_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1445584_26	COG	COG2369	NA	NA
UHGV-1445584_26	Structural annotation	PF06152	NA	NA
UHGV-1445584_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1445584_28	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-1445584_28	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-1445584_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1445584_28	Structural annotation	PF06810	NA	NA
UHGV-1445584_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-1445584_29	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1445584_29	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1445584_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1445584_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1445584_30	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-1445584_31	PHROG	phrog_3366	NA	unknown function
UHGV-1445584_31	eggNOG-mapper	1304866.K413DRAFT_3040	NA	NA
UHGV-1445584_31	Pfam	PF20536	NA	DUF6751
UHGV-1445584_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1445584_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1445584_32	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-1445584_32	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-1445584_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1445584_32	Structural annotation	PF11114	NA	NA
UHGV-1445584_33	PHROG	phrog_3266	tail completion	connector
UHGV-1445584_33	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-1445584_33	Structural annotation	PF20765	NA	NA
UHGV-1445584_34	PHROG	phrog_3099	NA	unknown function
UHGV-1445584_34	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-1445584_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1445584_35	PHROG	phrog_11299	NA	unknown function
UHGV-1445584_35	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-1445584_35	Structural annotation	PF10666	NA	NA
UHGV-1445584_36	PHROG	phrog_706	NA	unknown function
UHGV-1445584_36	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-1445584_36	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-1445584_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1445584_36	Structural annotation	PF06854	NA	NA
UHGV-1445584_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1445584_37	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1445584_37	COG	COG1511	NA	NA
UHGV-1445584_37	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1445584_38	PHROG	phrog_1194	NA	unknown function
UHGV-1445584_38	Pfam	PF20458	NA	DUF6711
UHGV-1445584_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1445584_39	PHROG	phrog_6616	tail protein	tail
UHGV-1445584_39	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-1445584_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1445584_41	Structural annotation	PF10651, NF009453	NA	NA