UHGV-1446489

Genome information

vOTU vOTU-019546

Genome length 54,161 bps

CDS count 87

Completeness 81.28% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1446489
vOTU ID	vOTU-019546
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0319979
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.16
Jumbo phage	No

Genome content
Genome length	54,161 bps
GC content	55.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	87.83%
Average CDS length	549.72 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1446489_1	PHROG	phrog_9994	NA	unknown function
UHGV-1446489_1	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-1446489_1	Structural annotation	PF20747	NA	NA
UHGV-1446489_3	PHROG	phrog_538	minor tail protein	tail
UHGV-1446489_3	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-1446489_3	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-1446489_3	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1446489_4	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-1446489_4	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-1446489_4	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1446489_5	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1446489_5	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-1446489_5	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-1446489_5	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1446489_7	PHROG	phrog_36579	NA	unknown function
UHGV-1446489_8	PHROG	phrog_117	major tail protein	tail
UHGV-1446489_8	UniRef90	UniRef90_A0A087AF65	Gp22	NA
UHGV-1446489_8	eggNOG-mapper	35760.BCHO_0834	NA	NA
UHGV-1446489_8	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1446489_9	eggNOG-mapper	35760.BCHO_0835	NA	NA
UHGV-1446489_9	Structural annotation	PF12691	NA	NA
UHGV-1446489_10	PHROG	phrog_32608	NA	unknown function
UHGV-1446489_10	Structural annotation	PF17395	NA	NA
UHGV-1446489_11	PHROG	phrog_25853	NA	unknown function
UHGV-1446489_11	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-1446489_11	eggNOG-mapper	35760.BCHO_0837	NA	NA
UHGV-1446489_11	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1446489_12	PHROG	phrog_36776	NA	unknown function
UHGV-1446489_12	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-1446489_13	PHROG	phrog_29	major head protein	head and packaging
UHGV-1446489_13	UniRef90	UniRef90_UPI0018C2985B	major capsid protein	NA
UHGV-1446489_13	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-1446489_13	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1446489_13	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1446489_14	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1446489_14	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-1446489_14	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-1446489_14	Structural annotation	PF02924	NA	NA
UHGV-1446489_15	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-1446489_15	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-1446489_16	PHROG	phrog_36668	NA	unknown function
UHGV-1446489_16	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-1446489_16	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1446489_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1446489_17	PHROG	phrog_104	portal protein	head and packaging
UHGV-1446489_17	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-1446489_17	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-1446489_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1446489_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1446489_18	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-1446489_18	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-1446489_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1446489_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1446489_19	PHROG	phrog_226	minor tail protein	tail
UHGV-1446489_20	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1446489_20	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-1446489_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1446489_20	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-1446489_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1446489_21	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1446489_21	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-1446489_21	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-1446489_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1446489_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1446489_23	Structural annotation	PF06194	NA	NA
UHGV-1446489_31	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-1446489_34	UniRef90	UniRef90_A0A564VKW7	HTH cro/C1-type domain-containing protein	NA
UHGV-1446489_34	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1446489_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1446489_35	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1446489_35	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1446489_35	UniRef90	UniRef90_A0A1X3A1X4	PbsX family transcriptional regulator	NA
UHGV-1446489_35	eggNOG-mapper	1435051.BMOU_1231	Helix-turn-helix XRE-family like proteins	NA
UHGV-1446489_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1446489_35	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-1446489_36	PHROG	phrog_14333	NA	unknown function
UHGV-1446489_36	UniRef90	UniRef90_A0A6I1GPA6	Transcriptional regulator	NA
UHGV-1446489_36	eggNOG-mapper	547043.BIFPSEUDO_03942	NA	NA
UHGV-1446489_36	Pfam	PF13711	NA	DUF4160
UHGV-1446489_36	Structural annotation	PF13711	NA	NA
UHGV-1446489_37	PHROG	phrog_37898	NA	unknown function
UHGV-1446489_37	UniRef90	UniRef90_A0A2U2MTW0	NA	NA
UHGV-1446489_37	eggNOG-mapper	702459.BBPR_0014	NA	NA
UHGV-1446489_37	Pfam	PF10387	NA	DUF2442
UHGV-1446489_40	PHROG	phrog_15934	NA	unknown function
UHGV-1446489_40	UniRef90	UniRef90_UPI00189B765D	tyrosine-type recombinase/integrase	NA
UHGV-1446489_40	eggNOG-mapper	1394176.AWUO01000014_gene644	NA	NA
UHGV-1446489_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1446489_41	PHROG	phrog_1	integrase	integration and excision
UHGV-1446489_41	UniRef90	UniRef90_A0A564VRE7	Tyrosine recombinase XerC	NA
UHGV-1446489_41	eggNOG-mapper	1394176.AWUO01000014_gene645	Belongs to the 'phage' integrase family	NA
UHGV-1446489_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1446489_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1446489_41	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1446489_42	PHROG	phrog_547	phosphoesterase	other
UHGV-1446489_42	UniRef90	UniRef90_A0A1X3A1P1	Metallophos domain-containing protein	NA
UHGV-1446489_42	eggNOG-mapper	1680.BADO_0635	phosphoesterase or phosphohydrolase	NA
UHGV-1446489_42	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1446489_42	COG	COG4186	NA	NA
UHGV-1446489_42	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-1446489_44	PHROG	phrog_13728	acetyltransferase	other
UHGV-1446489_44	UniRef90	UniRef90_A0A0G9M8K5	N-acetyltransferase domain-containing protein	NA
UHGV-1446489_44	eggNOG-mapper	395494.Galf_0898	acetyltransferase	NA
UHGV-1446489_44	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1446489_44	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1446489_48	PHROG	phrog_908	NA	unknown function
UHGV-1446489_48	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-1446489_49	Structural annotation	PF13384	NA	NA
UHGV-1446489_52	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-1446489_52	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1446489_54	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-1446489_55	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1446489_55	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-1446489_55	eggNOG-mapper	104623.Ser39006_02605	methyltransferase	NA
UHGV-1446489_55	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1446489_55	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1446489_55	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1446489_55	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1446489_62	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-1446489_63	PHROG	phrog_236	nucleotide kinase	other
UHGV-1446489_63	UniRef90	UniRef90_A0A1X2Z7L9	NA	NA
UHGV-1446489_63	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-1446489_63	Pfam	PF11753	NA	DUF3310
UHGV-1446489_66	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1446489_66	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1446489_66	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-1446489_66	eggNOG-mapper	1151126.AQYI01000003_gene554	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1446489_66	Pfam	PF00692	dUTPase	dUTPase
UHGV-1446489_66	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1446489_66	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1446489_66	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1446489_67	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-1446489_67	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-1446489_67	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-1446489_67	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-1446489_67	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-1446489_68	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-1446489_69	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1446489_69	eggNOG-mapper	1437610.BREU_1410	NA	NA
UHGV-1446489_71	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1446489_71	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-1446489_71	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-1446489_71	Structural annotation	PF13588, COG1591	NA	NA
UHGV-1446489_72	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1446489_72	UniRef90	UniRef90_A0A1X2ZJI9	Single-stranded DNA-binding protein	NA
UHGV-1446489_72	eggNOG-mapper	1622193.A0A0E3XA19_9CAUD	Single-strand binding protein family	NA
UHGV-1446489_72	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1446489_72	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1446489_75	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1446489_75	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-1446489_75	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-1446489_75	Pfam	PF03837	RecT family	RecT
UHGV-1446489_75	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1446489_75	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1446489_75	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-1446489_76	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-1446489_77	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-1446489_77	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-1446489_77	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-1446489_77	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-1446489_77	COG	COG1566	Multidrug resistance efflux pump EmrA	NA
UHGV-1446489_77	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-1446489_81	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1446489_81	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1446489_81	UniRef90	UniRef90_A7A2N3	BRO family, N-terminal domain protein	NA
UHGV-1446489_81	eggNOG-mapper	78345.BMERY_0904	BRO family, N-terminal domain	NA
UHGV-1446489_81	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1446489_81	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1446489_81	COG	COG3617	Prophage antirepressor	NA
UHGV-1446489_81	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-1446489_82	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1446489_82	PHROG	phrog_9562	NA	unknown function
UHGV-1446489_82	UniRef90	UniRef90_A0A1X2Z188	Pentapeptide repeat protein	NA
UHGV-1446489_82	eggNOG-mapper	1235799.C818_02571	Pentapeptide repeats (9 copies)	NA
UHGV-1446489_82	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1446489_82	Pfam	PF19062	NA	DUF5758
UHGV-1446489_82	COG	COG1357	NA	NA
UHGV-1446489_82	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-1446489_83	PHROG	phrog_9103	transcriptional repressor	transcription regulation
UHGV-1446489_83	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-1446489_83	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-1446489_83	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-1446489_84	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1446489_84	UniRef90	UniRef90_A0A1X2ZGN8	DNA-binding protein	NA
UHGV-1446489_84	eggNOG-mapper	1437605.BACT_1107	NA	NA
UHGV-1446489_84	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-1446489_85	PHROG	phrog_87	metallo-protease	other
UHGV-1446489_85	UniRef90	UniRef90_A0A1X2ZJP7	Peptidase_M78 domain-containing protein	NA
UHGV-1446489_85	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-1446489_85	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1446489_85	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1446489_87	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-1446489_87	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1446489_87	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-1446489_87	eggNOG-mapper	35760.BCHO_0602	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-1446489_87	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-1446489_87	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-1446489_87	COG	COG0207	Thymidylate synthase	NA
UHGV-1446489_87	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-1446489_87	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA