UHGV-1446611

Genome information

Genome length 24,673 bps

CDS count 47

Completeness 56.68% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-1446611
vOTU ID	vOTU-025285
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0180049
BioSample	SAMEA3182066
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.58
Jumbo phage	No

Genome content
Genome length	24,673 bps
GC content	54.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.43%
Average CDS length	479.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1446611_2	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-1446611_3	KOfam	K14059	int; integrase	NA
UHGV-1446611_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1446611_3	UniRef90	UniRef90_A0A645FJH8	Tyrosine recombinase XerC	NA
UHGV-1446611_3	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1446611_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1446611_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1446611_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1446611_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1446611_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1446611_4	UniRef90	UniRef90_A0A3A6E835	XRE family transcriptional regulator	NA
UHGV-1446611_4	eggNOG-mapper	718252.FP2_25580	NA	NA
UHGV-1446611_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1446611_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1446611_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1446611_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1446611_5	UniRef90	UniRef90_UPI000E31DAF9	helix-turn-helix domain-containing protein	NA
UHGV-1446611_5	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1446611_5	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-1446611_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1446611_6	eggNOG-mapper	573413.Spirs_1961	DNA RNA non-specific endonuclease	NA
UHGV-1446611_6	COG	COG1864	DNA/RNA endonuclease G, NUC1	NA
UHGV-1446611_7	PHROG	phrog_14088	NA	unknown function
UHGV-1446611_7	UniRef90	UniRef90_A0A3B8S8C0	Carboxypeptidase	NA
UHGV-1446611_7	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-1446611_9	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1446611_11	eggNOG-mapper	1033743.CAES01000078_gene3736	Flagellar Assembly Protein A	NA
UHGV-1446611_11	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-1446611_11	Structural annotation	PF03961	NA	NA
UHGV-1446611_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1446611_12	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-1446611_12	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-1446611_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1446611_12	Structural annotation	PF05565	NA	NA
UHGV-1446611_13	PHROG	phrog_14970	NA	unknown function
UHGV-1446611_13	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-1446611_13	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-1446611_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1446611_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1446611_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1446611_14	PHROG	phrog_1389	NA	unknown function
UHGV-1446611_14	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-1446611_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1446611_15	PHROG	phrog_7566	NA	unknown function
UHGV-1446611_15	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1446611_15	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1446611_16	PHROG	phrog_4973	NA	unknown function
UHGV-1446611_16	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-1446611_16	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1446611_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1446611_16	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1446611_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1446611_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1446611_17	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-1446611_17	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-1446611_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1446611_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1446611_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1446611_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1446611_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1446611_18	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1446611_18	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-1446611_18	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-1446611_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1446611_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1446611_19	UniRef90	UniRef90_A0A1C5N534	Endodeoxyribonuclease RusA	NA
UHGV-1446611_19	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1446611_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1446611_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1446611_21	UniRef90	UniRef90_UPI001D034588	Lar family restriction alleviation protein	NA
UHGV-1446611_21	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1446611_21	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1446611_23	PHROG	phrog_10714	NA	unknown function
UHGV-1446611_23	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1446611_23	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-1446611_23	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1446611_25	PHROG	phrog_25732	NA	unknown function
UHGV-1446611_25	Structural annotation	NF011227	NA	NA
UHGV-1446611_26	PHROG	phrog_28782	NA	unknown function
UHGV-1446611_26	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-1446611_26	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-1446611_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1446611_28	Structural annotation	PF10711, TIGR03433	NA	NA
UHGV-1446611_31	PHROG	phrog_22543	NA	unknown function
UHGV-1446611_35	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1446611_35	UniRef90	UniRef90_A0A1C6IRL8	NA	NA
UHGV-1446611_35	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1446611_35	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1446611_35	Structural annotation	PF18909	NA	NA
UHGV-1446611_37	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-1446611_37	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1446611_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1446611_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1446611_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1446611_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1446611_39	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1446611_39	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-1446611_39	eggNOG-mapper	1230341.MJ3_13584	Terminase, small subunit	NA
UHGV-1446611_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1446611_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1446611_39	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1446611_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1446611_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1446611_40	UniRef90	UniRef90_UPI001105ADB4	PBSX family phage terminase large subunit	NA
UHGV-1446611_40	eggNOG-mapper	1226322.HMPREF1545_03843	phage Terminase large subunit	NA
UHGV-1446611_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1446611_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1446611_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-1446611_40	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1446611_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-1446611_41	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1446611_41	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1446611_42	PHROG	phrog_30605	NA	unknown function
UHGV-1446611_43	PHROG	phrog_35275	NA	unknown function
UHGV-1446611_43	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1446611_44	PHROG	phrog_24113	NA	unknown function
UHGV-1446611_44	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1446611_44	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1446611_45	PHROG	phrog_371	major head protein	head and packaging
UHGV-1446611_45	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1446611_45	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1446611_45	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1446611_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1446611_46	PHROG	phrog_12105	NA	unknown function
UHGV-1446611_46	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1446611_47	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1446611_47	PHROG	phrog_819	tail protein	tail
UHGV-1446611_47	eggNOG-mapper	478749.BRYFOR_07557	tail collar domain protein	NA
UHGV-1446611_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1446611_47	COG	COG4675	Phage tail collar domain	NA