UHGV-1446666

Genome information

Genome length 43,654 bps

CDS count 53

Completeness 96.54% (high-quality)

geNomad score 0.9222

Prediction confidence Confident

Genome information
Genome ID	UHGV-1446666
vOTU ID	vOTU-010064
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4420449
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9222
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.3
Jumbo phage	No

Genome content
Genome length	43,654 bps
GC content	31.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.83%
Average CDS length	752.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1446666_4	KOfam	K14575	AFG2, DRG1, SPATA5; AAA family ATPase	NA
UHGV-1446666_4	UniRef90	UniRef90_A0A292SUF4	ATPase_AAA_core domain-containing protein	NA
UHGV-1446666_4	eggNOG-mapper	1033806.HTIA_0224	COG0464 ATPases of the AAA class	NA
UHGV-1446666_4	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1446666_4	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-1446666_6	KOfam	K03798	ftsH, hflB; cell division protease FtsH [EC:3.4.24.-]	NA
UHGV-1446666_6	PHROG	phrog_168	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1446666_6	UniRef90	UniRef90_A0A292SUS1	AAA domain-containing protein	NA
UHGV-1446666_6	eggNOG-mapper	864565.HMPREF0379_1711	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins	NA
UHGV-1446666_6	PADLOC	IetA_00002	NA	ietAS
UHGV-1446666_6	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1446666_6	COG	COG0465	ATP-dependent Zn proteases	NA
UHGV-1446666_7	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-1446666_7	PHROG	phrog_168	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1446666_7	UniRef90	UniRef90_A0A292S845	ATPase_AAA_core domain-containing protein	NA
UHGV-1446666_7	eggNOG-mapper	1211035.CD30_06720	AAA domain (dynein-related subfamily)	NA
UHGV-1446666_7	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1446666_7	COG	COG0465	ATP-dependent Zn proteases	NA
UHGV-1446666_8	KOfam	K12196	VPS4; vacuolar protein-sorting-associated protein 4	NA
UHGV-1446666_8	PHROG	phrog_168	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1446666_8	UniRef90	UniRef90_A0A292SUF3	AAA domain-containing protein	NA
UHGV-1446666_8	eggNOG-mapper	632335.Calkr_1607	PFAM AAA ATPase central domain protein	NA
UHGV-1446666_8	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-1446666_8	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-1446666_11	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1446666_11	PHROG	phrog_5867	endolysin	lysis
UHGV-1446666_11	UniRef90	UniRef90_A0A292SUJ5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1446666_11	eggNOG-mapper	1255043.TVNIR_1739	Chitinase class I	NA
UHGV-1446666_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1446666_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1446666_11	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1446666_12	PHROG	phrog_16442	NA	unknown function
UHGV-1446666_12	UniRef90	UniRef90_A0A292SUE7	TIR-like domain-containing protein	NA
UHGV-1446666_12	eggNOG-mapper	1331060.RLDS_22865	Predicted nucleotide-binding protein containing TIR-like domain	NA
UHGV-1446666_12	PADLOC	Pyc_TIR	NA	Pycsar
UHGV-1446666_12	Pfam	PF10137	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
UHGV-1446666_12	COG	COG4271	Predicted nucleotide-binding protein containing TIR -like domain	NA
UHGV-1446666_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1446666_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1446666_13	UniRef90	UniRef90_A0A292SUF1	PBSX family phage terminase large subunit	NA
UHGV-1446666_13	eggNOG-mapper	1267535.KB906767_gene2463	phage Terminase large subunit	NA
UHGV-1446666_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1446666_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1446666_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-1446666_13	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1446666_14	PHROG	phrog_1863	NA	unknown function
UHGV-1446666_14	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-1446666_14	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-1446666_15	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-1446666_15	UniRef90	UniRef90_A0A843HT70	NA	NA
UHGV-1446666_15	Pfam	PF07087	NA	DUF1353
UHGV-1446666_15	Structural annotation	PF07087	NA	NA
UHGV-1446666_21	Structural annotation	PF11039, MF_02210, NF008072, COG1247	NA	NA
UHGV-1446666_22	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-1446666_23	UniRef90	UniRef90_UPI001C961AE5	NA	NA
UHGV-1446666_23	eggNOG-mapper	1410616.JHXE01000020_gene2702	NA	NA
UHGV-1446666_23	Pfam	PF12686	NA	DUF3800
UHGV-1446666_24	Structural annotation	PF20387	NA	NA
UHGV-1446666_26	PHROG	phrog_24894	NA	unknown function
UHGV-1446666_26	Structural annotation	COG4288	NA	NA
UHGV-1446666_27	PHROG	phrog_267	major head protein	head and packaging
UHGV-1446666_27	eggNOG-mapper	749413.E5DV53_9VIRU	P22 coat protein - gene protein 5	NA
UHGV-1446666_27	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1446666_30	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1446666_30	UniRef90	UniRef90_K2EAN5	Portal protein	NA
UHGV-1446666_33	Structural annotation	PF17574	NA	NA
UHGV-1446666_37	eggNOG-mapper	857087.Metme_1985	NA	NA
UHGV-1446666_37	Pfam	PF21781	NA	DUF6876
UHGV-1446666_37	Structural annotation	PF21781	NA	NA
UHGV-1446666_38	eggNOG-mapper	1007096.BAGW01000006_gene1758	Putative amidoligase enzyme	NA
UHGV-1446666_38	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-1446666_38	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-1446666_39	PHROG	phrog_25883	NA	unknown function
UHGV-1446666_39	UniRef90	UniRef90_A0A516LNW0	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-1446666_39	COG	COG0449	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	NA
UHGV-1446666_39	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-1446666_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1446666_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1446666_44	UniRef90	UniRef90_A0A292SUM5	Peptidase_S24 domain-containing protein	NA
UHGV-1446666_44	eggNOG-mapper	644076.SCH4B_1728	transcriptional regulator	NA
UHGV-1446666_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1446666_44	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1446666_44	Structural annotation	PF00717, PF20432, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1446666_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1446666_46	UniRef90	UniRef90_A0A292SUI4	YqaJ domain-containing protein	NA
UHGV-1446666_46	eggNOG-mapper	391009.Tmel_1473	YqaJ-like viral recombinase domain	NA
UHGV-1446666_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1446666_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1446666_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1446666_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1446666_47	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1446666_47	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1446666_47	UniRef90	UniRef90_A0A292SUJ4	Recombinase RecT	NA
UHGV-1446666_47	eggNOG-mapper	1150474.JQJI01000011_gene54	RecT family	NA
UHGV-1446666_47	Pfam	PF03837	RecT family	RecT
UHGV-1446666_47	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1446666_47	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1446666_47	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1446666_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1446666_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1446666_48	Structural annotation	PF00436, MF_00984, NF005241, COG2965	NA	NA
UHGV-1446666_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1446666_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1446666_49	UniRef90	UniRef90_A0A292SUW2	DNA helicase	NA
UHGV-1446666_49	eggNOG-mapper	1215915.BN193_04510	Participates in initiation and elongation during chromosome replication	NA
UHGV-1446666_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1446666_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1446666_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-1446666_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1446666_52	KOfam	K14059	int; integrase	NA
UHGV-1446666_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1446666_52	UniRef90	UniRef90_R5SD36	Site specific recombinase	NA
UHGV-1446666_52	eggNOG-mapper	1047013.AQSP01000137_gene547	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1446666_52	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1446666_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1446666_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1446666_52	Structural annotation	PF00589, PF20172, MF_01808, TIGR02224, COG4974	NA	NA