UHGV-1447022

Genome information

Genome length 28,033 bps

CDS count 43

Completeness 66.43% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-1447022
vOTU ID	vOTU-032255
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0200391
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.61
Jumbo phage	No

Genome content
Genome length	28,033 bps
GC content	36.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.94%
Average CDS length	617.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1447022_1	PHROG	phrog_1536	NA	unknown function
UHGV-1447022_1	eggNOG-mapper	1158602.I590_02582	NA	NA
UHGV-1447022_2	PHROG	phrog_7389	tail fiber protein	tail
UHGV-1447022_2	eggNOG-mapper	1458851.X2KQE1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1447022_4	PHROG	phrog_6907	NA	unknown function
UHGV-1447022_4	UniRef90	UniRef90_A0A2T5D5H6	Collagen-like protein	NA
UHGV-1447022_4	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-1447022_5	PHROG	phrog_9625	NA	unknown function
UHGV-1447022_5	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-1447022_6	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-1447022_6	UniRef90	UniRef90_UPI000F811C55	phage baseplate upper protein	NA
UHGV-1447022_6	eggNOG-mapper	1201292.DR75_1628	NA	NA
UHGV-1447022_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1447022_6	Structural annotation	PF10651, NF040788	NA	NA
UHGV-1447022_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1447022_7	UniRef90	UniRef90_A0A6I4XSA3	CHAP domain-containing protein	NA
UHGV-1447022_7	eggNOG-mapper	226185.EF_2811	Prophage endopeptidase tail	NA
UHGV-1447022_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1447022_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1447022_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-1447022_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1447022_7	COG	COG4926	Phage-related protein	NA
UHGV-1447022_7	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-1447022_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1447022_8	UniRef90	UniRef90_UPI001A8F464D	phage tail protein	NA
UHGV-1447022_8	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-1447022_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-1447022_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1447022_9	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1447022_9	UniRef90	UniRef90_R3J3I9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1447022_9	eggNOG-mapper	226185.EF_2813	Phage-related minor tail protein	NA
UHGV-1447022_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1447022_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1447022_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1447022_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1447022_10	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-1447022_10	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-1447022_10	eggNOG-mapper	226185.EF_2814	NA	NA
UHGV-1447022_10	Structural annotation	PF11836	NA	NA
UHGV-1447022_11	PHROG	phrog_11502	tail protein	tail
UHGV-1447022_11	UniRef90	UniRef90_E0HBX9	Phage major tail protein, phi13 family	NA
UHGV-1447022_11	eggNOG-mapper	226185.EF_2815	NA	NA
UHGV-1447022_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1447022_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1447022_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1447022_12	UniRef90	UniRef90_E6EVG3	Phage protein, HK97 gp10 family	NA
UHGV-1447022_12	eggNOG-mapper	226185.EF_2816	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1447022_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1447022_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1447022_12	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1447022_13	PHROG	phrog_78	tail terminator	connector
UHGV-1447022_13	UniRef90	UniRef90_A0A0M2A8L3	NA	NA
UHGV-1447022_13	eggNOG-mapper	226185.EF_2817	NA	NA
UHGV-1447022_13	Structural annotation	PF20765	NA	NA
UHGV-1447022_14	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-1447022_14	UniRef90	UniRef90_A0A0M2A8D0	Phage minor structural protein	NA
UHGV-1447022_14	eggNOG-mapper	1158614.I592_02331	Phage head-tail joining protein	NA
UHGV-1447022_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1447022_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1447022_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1447022_15	PHROG	phrog_4609	NA	unknown function
UHGV-1447022_15	UniRef90	UniRef90_UPI00191BBEB2	phage gp6-like head-tail connector protein	NA
UHGV-1447022_15	eggNOG-mapper	1158614.I592_02332	Phage gp6-like head-tail connector protein	NA
UHGV-1447022_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1447022_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-1447022_16	UniRef90	UniRef90_E0HBX4	Phage major capsid protein, HK97 family	NA
UHGV-1447022_16	eggNOG-mapper	1158614.I592_02333	Phage capsid family	NA
UHGV-1447022_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1447022_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1447022_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1447022_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1447022_17	KOfam	K06904	NA	NA
UHGV-1447022_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1447022_17	UniRef90	UniRef90_E0HBX3	Phage prohead protease, HK97 family	NA
UHGV-1447022_17	eggNOG-mapper	1158614.I592_02334	Caudovirus prohead serine protease	NA
UHGV-1447022_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1447022_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1447022_17	COG	COG3740	Phage head maturation protease	NA
UHGV-1447022_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1447022_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-1447022_18	UniRef90	UniRef90_A0A0M2A8P0	HK97 family phage portal protein	NA
UHGV-1447022_18	eggNOG-mapper	1158614.I592_02335	Phage portal protein	NA
UHGV-1447022_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1447022_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1447022_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1447022_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1447022_19	UniRef90	UniRef90_E0HBX1	Putative phage terminase, large subunit	NA
UHGV-1447022_19	eggNOG-mapper	1158614.I592_02336	Phage Terminase	NA
UHGV-1447022_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1447022_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1447022_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1447022_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1447022_20	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1447022_20	UniRef90	UniRef90_A0A2W4BC49	Terminase	NA
UHGV-1447022_20	eggNOG-mapper	1158614.I592_02337	NA	NA
UHGV-1447022_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1447022_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1447022_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447022_21	UniRef90	UniRef90_A0A0M2A8Z0	HNHc domain-containing protein	NA
UHGV-1447022_21	eggNOG-mapper	1145276.T479_01605	HNH endonuclease	NA
UHGV-1447022_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1447022_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1447022_21	Structural annotation	PF05766	NA	NA
UHGV-1447022_23	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1447022_23	UniRef90	UniRef90_E0HBW7	Phage transcriptional regulator, ArpU family	NA
UHGV-1447022_23	eggNOG-mapper	226185.EF_2828	NA	NA
UHGV-1447022_23	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1447022_23	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-1447022_24	PHROG	phrog_18457	NA	unknown function
UHGV-1447022_25	PHROG	phrog_1335	NA	unknown function
UHGV-1447022_26	PHROG	phrog_121	NA	unknown function
UHGV-1447022_26	UniRef90	UniRef90_UPI000666B1A9	NA	NA
UHGV-1447022_26	eggNOG-mapper	1300150.EMQU_2281	NA	NA
UHGV-1447022_26	Pfam	PF07852	NA	DUF1642
UHGV-1447022_26	Structural annotation	PF07852	NA	NA
UHGV-1447022_27	PHROG	phrog_4615	NA	unknown function
UHGV-1447022_28	PHROG	phrog_6513	NA	unknown function
UHGV-1447022_29	PHROG	phrog_23115	NA	unknown function
UHGV-1447022_29	eggNOG-mapper	226185.EF_2120	NA	NA
UHGV-1447022_30	PHROG	phrog_1150	NA	unknown function
UHGV-1447022_30	eggNOG-mapper	1201292.DR75_1651	NA	NA
UHGV-1447022_31	PHROG	phrog_98	NA	unknown function
UHGV-1447022_31	UniRef90	UniRef90_E0HA84	YopX domain-containing protein	NA
UHGV-1447022_31	eggNOG-mapper	673835.D2IZE6_9CAUD	YopX protein	NA
UHGV-1447022_31	Pfam	PF09643	YopX protein	YopX
UHGV-1447022_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1447022_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1447022_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1447022_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1447022_32	UniRef90	UniRef90_E0HA83	Cytosine-specific methyltransferase	NA
UHGV-1447022_32	eggNOG-mapper	1300150.EMQU_2511	C-5 cytosine-specific DNA methylase	NA
UHGV-1447022_32	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1447022_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1447022_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1447022_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1447022_32	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-1447022_33	PHROG	phrog_8929	NA	unknown function
UHGV-1447022_34	PHROG	phrog_5403	NA	unknown function
UHGV-1447022_34	UniRef90	UniRef90_V5XLE1	Gp58	NA
UHGV-1447022_34	eggNOG-mapper	1201292.DR75_1656	NA	NA
UHGV-1447022_35	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1447022_35	UniRef90	UniRef90_UPI001785D8EB	NA	NA
UHGV-1447022_35	eggNOG-mapper	226185.EF_2836	NA	NA
UHGV-1447022_35	Pfam	PF06356	NA	DUF1064
UHGV-1447022_36	PHROG	phrog_28610	NA	unknown function
UHGV-1447022_37	PHROG	phrog_13888	NA	unknown function
UHGV-1447022_37	eggNOG-mapper	1201292.DR75_1658	NA	NA
UHGV-1447022_37	Structural annotation	PF11011	NA	NA
UHGV-1447022_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1447022_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1447022_38	UniRef90	UniRef90_A0A059N2Y7	AAA domain-containing protein	NA
UHGV-1447022_38	eggNOG-mapper	226185.EF_2838	IstB-like ATP binding protein	NA
UHGV-1447022_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1447022_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1447022_38	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1447022_39	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1447022_39	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1447022_39	UniRef90	UniRef90_A0A855P645	DnaD domain protein	NA
UHGV-1447022_39	eggNOG-mapper	1201292.DR75_1660	Replication initiation and membrane attachment	NA
UHGV-1447022_39	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1447022_39	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1447022_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1447022_39	Structural annotation	PF09681, NF033788, COG5529	NA	NA
UHGV-1447022_40	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447022_40	UniRef90	UniRef90_Q830E7	NA	NA
UHGV-1447022_40	eggNOG-mapper	1201292.DR75_1661	NA	NA
UHGV-1447022_40	Pfam	PF12684	NA	DUF3799
UHGV-1447022_40	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1447022_40	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1447022_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1447022_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1447022_41	UniRef90	UniRef90_A0A0M2A8Q8	Phage RecT family recombinase	NA
UHGV-1447022_41	eggNOG-mapper	1201292.DR75_1662	RecT family	NA
UHGV-1447022_41	Pfam	PF03837	RecT family	RecT
UHGV-1447022_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1447022_41	Structural annotation	PF03837, NF007351, COG3723	NA	NA