UHGV-1447307

Genome information

vOTU vOTU-020064

Genome length 27,972 bps

CDS count 36

Completeness 60.65% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-1447307
vOTU ID	vOTU-020064
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0199991
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.09
Jumbo phage	No

Genome content
Genome length	27,972 bps
GC content	66.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	94.33%
Average CDS length	736.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1447307_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1447307_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447307_1	UniRef90	UniRef90_A0A7T3T3Q9	HNH endonuclease	NA
UHGV-1447307_1	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-1447307_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1447307_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1447307_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1447307_3	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-1447307_3	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-1447307_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1447307_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1447307_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1447307_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1447307_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-1447307_4	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-1447307_4	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-1447307_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1447307_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1447307_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1447307_5	KOfam	K06904	NA	NA
UHGV-1447307_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1447307_5	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-1447307_5	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-1447307_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1447307_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1447307_5	COG	COG3740	Phage head maturation protease	NA
UHGV-1447307_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1447307_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1447307_6	UniRef90	UniRef90_A0A1Y4GX93	Phage major capsid protein	NA
UHGV-1447307_6	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1447307_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1447307_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1447307_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1447307_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1447307_7	PHROG	phrog_5223	neck protein	connector
UHGV-1447307_7	UniRef90	UniRef90_A0A1L8I5X8	DNA-packaging protein	NA
UHGV-1447307_7	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-1447307_7	Structural annotation	TIGR01560	NA	NA
UHGV-1447307_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1447307_8	eggNOG-mapper	642492.Clole_0746	Phage head-tail joining protein	NA
UHGV-1447307_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1447307_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1447307_9	UniRef90	UniRef90_A0A2X2USJ8	Prophage pi2 protein 37	NA
UHGV-1447307_9	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-1447307_9	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-1447307_10	Structural annotation	PF09646	NA	NA
UHGV-1447307_11	PHROG	phrog_88	major tail protein	tail
UHGV-1447307_11	UniRef90	UniRef90_UPI00190C1F5E	phage tail protein	NA
UHGV-1447307_11	eggNOG-mapper	1382358.JHVN01000024_gene1713	phage tail protein	NA
UHGV-1447307_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1447307_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1447307_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1447307_13	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-1447307_13	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-1447307_13	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-1447307_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1447307_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1447307_13	COG	COG1340	NA	NA
UHGV-1447307_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1447307_14	eggNOG-mapper	887929.HMP0721_0693	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-1447307_14	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-1447307_14	Pfam	PF00652	Ricin-type beta-trefoil lectin domain	Ricin_B_lectin
UHGV-1447307_14	COG	COG1472	Periplasmic beta-glucosidase and related glycosidases	NA
UHGV-1447307_15	PHROG	phrog_1887	tail protein	tail
UHGV-1447307_15	eggNOG-mapper	1504822.CCNO01000016_gene271	NA	NA
UHGV-1447307_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1447307_19	PHROG	phrog_962	holin	lysis
UHGV-1447307_19	UniRef90	UniRef90_E6MGW7	Holin, phage phi LC3 family	NA
UHGV-1447307_19	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-1447307_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1447307_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1447307_19	COG	COG5546	NA	NA
UHGV-1447307_19	Structural annotation	COG5546	NA	NA
UHGV-1447307_20	PHROG	phrog_14030	NA	unknown function
UHGV-1447307_20	UniRef90	UniRef90_UPI0013A63178	NlpC/P60 family protein	NA
UHGV-1447307_20	eggNOG-mapper	1042156.CXIVA_09110	NLP P60 protein	NA
UHGV-1447307_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1447307_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1447307_21	KOfam	K14059	int; integrase	NA
UHGV-1447307_21	PHROG	phrog_1	integrase	integration and excision
UHGV-1447307_21	UniRef90	UniRef90_A0A1H1L456	Tyr recombinase domain-containing protein	NA
UHGV-1447307_21	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-1447307_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1447307_21	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1447307_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1447307_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1447307_22	UniRef90	UniRef90_W8YQ78	Putative transcriptional regulator	NA
UHGV-1447307_22	eggNOG-mapper	907348.TresaDRAFT_2039	peptidyl-tyrosine sulfation	NA
UHGV-1447307_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1447307_22	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1447307_22	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1447307_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1447307_23	UniRef90	UniRef90_A0A0X1TLQ2	HTH cro/C1-type domain-containing protein	NA
UHGV-1447307_23	eggNOG-mapper	411467.BACCAP_04149	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1447307_23	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1447307_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1447307_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1447307_26	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1447307_26	UniRef90	UniRef90_UPI001C6A69B0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1447307_26	eggNOG-mapper	445975.COLSTE_02540	Endodeoxyribonuclease RusA	NA
UHGV-1447307_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1447307_28	PHROG	phrog_34396	NA	unknown function
UHGV-1447307_28	UniRef90	UniRef90_UPI00083869CF	NA	NA
UHGV-1447307_28	eggNOG-mapper	521003.COLINT_02315	NA	NA
UHGV-1447307_28	Pfam	PF07083	NA	DUF1351
UHGV-1447307_28	Structural annotation	PF07083	NA	NA
UHGV-1447307_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1447307_29	UniRef90	UniRef90_UPI0003AE3BEA	ERF family protein	NA
UHGV-1447307_29	eggNOG-mapper	1111121.HMPREF1247_0047	Erf family	NA
UHGV-1447307_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-1447307_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1447307_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1447307_30	UniRef90	UniRef90_UPI000F5267FA	DNA cytosine methyltransferase	NA
UHGV-1447307_30	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-1447307_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1447307_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1447307_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1447307_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1447307_30	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-1447307_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1447307_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1447307_31	UniRef90	UniRef90_UPI0012ABCF55	single-stranded DNA-binding protein	NA
UHGV-1447307_31	eggNOG-mapper	521095.Apar_0020	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1447307_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1447307_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1447307_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1447307_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1447307_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1447307_32	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1447307_32	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1447307_32	UniRef90	UniRef90_UPI000409F185	dUTP diphosphatase	NA
UHGV-1447307_32	eggNOG-mapper	1121934.AUDX01000004_gene2520	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1447307_32	Pfam	PF00692	dUTPase	dUTPase
UHGV-1447307_32	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1447307_32	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1447307_32	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1447307_33	eggNOG-mapper	5888.CAK94245	RNA polymerase II transcription regulator recruiting activity	NA
UHGV-1447307_33	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-1447307_34	Pfam	PF08279	HTH domain	HTH_11
UHGV-1447307_35	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-1447307_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1447307_36	UniRef90	UniRef90_UPI001BAED9A4	Bro-N domain-containing protein	NA
UHGV-1447307_36	eggNOG-mapper	1125712.HMPREF1316_2390	BRO family, N-terminal domain	NA
UHGV-1447307_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1447307_36	COG	COG3617	Prophage antirepressor	NA
UHGV-1447307_36	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA