UHGV-1447689

Genome information

Genome length 26,789 bps

CDS count 41

Completeness 66.56% (medium-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-1447689
vOTU ID	vOTU-035212
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0193230
BioSample	SAMEA2160045
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.03
Jumbo phage	No

Genome content
Genome length	26,789 bps
GC content	30.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.54%
Average CDS length	599.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1447689_1	eggNOG-mapper	272563.CD630_09170	Phage recombination protein Bet	NA
UHGV-1447689_1	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1447689_2	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-1447689_2	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-1447689_2	Structural annotation	PF07878, TIGR04563, COG4877	NA	NA
UHGV-1447689_3	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1447689_3	UniRef90	UniRef90_UPI00068AA660	helix-turn-helix domain-containing protein	NA
UHGV-1447689_3	eggNOG-mapper	1408823.AXUS01000025_gene2662	DNA-binding transcription factor activity	NA
UHGV-1447689_3	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1447689_3	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-1447689_3	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-1447689_4	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1447689_4	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1447689_4	UniRef90	UniRef90_A0A5P3XF33	DNA helicase	NA
UHGV-1447689_4	eggNOG-mapper	272563.CD630_06260	DnaB-like helicase N terminal domain	NA
UHGV-1447689_4	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1447689_4	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1447689_4	COG	COG0305	Replicative DNA helicase	NA
UHGV-1447689_4	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1447689_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447689_6	UniRef90	UniRef90_UPI0011060369	helix-turn-helix domain-containing protein	NA
UHGV-1447689_6	eggNOG-mapper	1410624.JNKK01000065_gene1264	NA	NA
UHGV-1447689_6	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-1447689_7	Structural annotation	PF09889	NA	NA
UHGV-1447689_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1447689_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1447689_8	UniRef90	UniRef90_UPI0011072725	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1447689_8	eggNOG-mapper	76869.PputGB1_1739	endodeoxyribonuclease RusA	NA
UHGV-1447689_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1447689_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1447689_8	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1447689_10	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1447689_10	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1447689_10	UniRef90	UniRef90_UPI0014852BBC	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1447689_10	eggNOG-mapper	768710.DesyoDRAFT_2483	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-1447689_10	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1447689_10	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1447689_10	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1447689_10	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1447689_10	Structural annotation	PF04542, PF13404, MF_00959, TIGR02835, COG1191	NA	NA
UHGV-1447689_12	Structural annotation	PF18482	NA	NA
UHGV-1447689_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1447689_13	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1447689_13	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-1447689_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1447689_13	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-1447689_19	PHROG	phrog_98	NA	unknown function
UHGV-1447689_19	UniRef90	UniRef90_A0A1C5YXI2	YopX protein	NA
UHGV-1447689_19	eggNOG-mapper	768726.HMPREF9178_1074	YopX protein	NA
UHGV-1447689_19	Pfam	PF09643	YopX protein	YopX
UHGV-1447689_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1447689_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1447689_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1447689_20	UniRef90	UniRef90_A0A1C5YXD8	Phage transcriptional regulator, RinA family	NA
UHGV-1447689_20	eggNOG-mapper	1415774.U728_2924	sigma factor activity	NA
UHGV-1447689_20	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1447689_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1447689_20	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1447689_21	PHROG	phrog_9079	NA	unknown function
UHGV-1447689_21	eggNOG-mapper	1476973.JMMB01000007_gene1167	NA	NA
UHGV-1447689_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1447689_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1447689_23	UniRef90	UniRef90_UPI001D16572B	terminase small subunit	NA
UHGV-1447689_23	eggNOG-mapper	545697.HMPREF0216_02842	Phage terminase, large subunit, PBSX family	NA
UHGV-1447689_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1447689_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1447689_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1447689_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1447689_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1447689_24	UniRef90	UniRef90_UPI00156FB1D5	PBSX family phage terminase large subunit	NA
UHGV-1447689_24	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-1447689_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1447689_25	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447689_25	UniRef90	UniRef90_UPI00087F42F2	GIY-YIG nuclease family protein	NA
UHGV-1447689_25	eggNOG-mapper	1345695.CLSA_c35600	GIY-YIG type nucleases (URI domain)	NA
UHGV-1447689_25	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1447689_25	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1447689_25	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1447689_25	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-1447689_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1447689_26	PHROG	phrog_10250	NA	unknown function
UHGV-1447689_26	UniRef90	UniRef90_A0A1C5YXC2	Phage terminase, large subunit, PBSX family	NA
UHGV-1447689_26	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1447689_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1447689_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1447689_26	Structural annotation	PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1447689_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-1447689_27	UniRef90	UniRef90_A0A1C5YX51	Phage portal protein, putative, A118 family	NA
UHGV-1447689_27	eggNOG-mapper	1443122.Z958_p0036	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1447689_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1447689_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1447689_28	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1447689_28	UniRef90	UniRef90_A0A1C5YWY9	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1447689_28	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-1447689_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1447689_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1447689_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1447689_29	PHROG	phrog_8446	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1447689_29	UniRef90	UniRef90_A0A6M1VMK9	HNH endonuclease	NA
UHGV-1447689_29	eggNOG-mapper	1158610.UC3_02343	regulation of methylation-dependent chromatin silencing	NA
UHGV-1447689_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1447689_29	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-1447689_29	Structural annotation	PF05766, NF008448	NA	NA
UHGV-1447689_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1447689_30	UniRef90	UniRef90_A0A1C5YXG1	Phage minor structural protein GP20	NA
UHGV-1447689_30	eggNOG-mapper	1033740.CAEW01000026_gene530	Phage minor structural protein GP20	NA
UHGV-1447689_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1447689_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1447689_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-1447689_31	UniRef90	UniRef90_UPI001C0F52E5	N4-gp56 family major capsid protein	NA
UHGV-1447689_31	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-1447689_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1447689_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1447689_32	PHROG	phrog_4020	NA	unknown function
UHGV-1447689_32	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-1447689_33	PHROG	phrog_8435	NA	unknown function
UHGV-1447689_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1447689_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1447689_34	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-1447689_34	eggNOG-mapper	559189.B6SBT4_9CAUD	NA	NA
UHGV-1447689_34	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1447689_35	PHROG	phrog_7585	NA	unknown function
UHGV-1447689_35	eggNOG-mapper	536232.CLM_3438	NA	NA
UHGV-1447689_35	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1447689_36	PHROG	phrog_6686	tail tube protein	tail
UHGV-1447689_36	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-1447689_36	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-1447689_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1447689_37	PHROG	phrog_6280	NA	unknown function
UHGV-1447689_37	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-1447689_37	eggNOG-mapper	748727.CLJU_c31240	NA	NA
UHGV-1447689_38	PHROG	phrog_6541	NA	unknown function
UHGV-1447689_38	eggNOG-mapper	1121342.AUCO01000012_gene1686	NA	NA
UHGV-1447689_39	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1447689_39	UniRef90	UniRef90_A0A1C5YW53	Phage-related protein	NA
UHGV-1447689_39	eggNOG-mapper	1032362.F6K8S0_9CAUD	peptidoglycan catabolic process	NA
UHGV-1447689_39	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1447689_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1447689_40	UniRef90	UniRef90_UPI00110706FB	phage tail family protein	NA
UHGV-1447689_40	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-1447689_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1447689_41	PHROG	phrog_13289	tail protein	tail
UHGV-1447689_41	UniRef90	UniRef90_UPI00148533BC	phage tail protein	NA
UHGV-1447689_41	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-1447689_41	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1447689_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1447689_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1447689_41	COG	COG4733	Phage-related protein, tail protein J	NA