UHGV-1448031

Genome information

Genome length 28,123 bps

CDS count 46

Completeness 68.45% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1448031
vOTU ID	vOTU-029466
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0200895
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.69
Jumbo phage	No

Genome content
Genome length	28,123 bps
GC content	48.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.46%
Average CDS length	587.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1448031_3	PHROG	phrog_25554	NA	unknown function
UHGV-1448031_4	UniRef90	UniRef90_A0A374PBQ3	Trigger factor	NA
UHGV-1448031_4	eggNOG-mapper	1298920.KI911353_gene4872	NA	NA
UHGV-1448031_5	UniRef90	UniRef90_A0A374P9F4	Phosphatase	NA
UHGV-1448031_5	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-1448031_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1448031_6	UniRef90	UniRef90_UPI0011064CD2	ERF family protein	NA
UHGV-1448031_6	eggNOG-mapper	1298920.KI911353_gene4870	ERF superfamily	NA
UHGV-1448031_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-1448031_6	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1448031_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1448031_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1448031_7	UniRef90	UniRef90_A0A0F0CNJ0	Single-stranded DNA-binding protein	NA
UHGV-1448031_7	eggNOG-mapper	1298920.KI911353_gene4869	Single-stranded DNA-binding protein	NA
UHGV-1448031_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1448031_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1448031_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1448031_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1448031_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1448031_8	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1448031_8	UniRef90	UniRef90_A0A2K2TWC1	ERCC4 domain-containing protein	NA
UHGV-1448031_8	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-1448031_8	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1448031_8	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1448031_9	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1448031_9	PHROG	phrog_11992	NA	unknown function
UHGV-1448031_9	UniRef90	UniRef90_D3ASX6	CHC2 zinc finger domain protein	NA
UHGV-1448031_9	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-1448031_9	PADLOC	drt-cluster192	DRT	DRT
UHGV-1448031_9	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1448031_9	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1448031_9	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1448031_10	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1448031_10	UniRef90	UniRef90_A0A3E2U7B1	NA	NA
UHGV-1448031_10	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-1448031_10	Pfam	PF06048	NA	DUF927
UHGV-1448031_10	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1448031_10	COG	COG5519	NA	NA
UHGV-1448031_10	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1448031_12	Structural annotation	MF_00773, NF041909, COG2075	NA	NA
UHGV-1448031_13	PHROG	phrog_15077	NA	unknown function
UHGV-1448031_13	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-1448031_13	eggNOG-mapper	1298920.KI911353_gene4863	NA	NA
UHGV-1448031_13	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-1448031_13	Structural annotation	NF038070	NA	NA
UHGV-1448031_17	eggNOG-mapper	1163671.JAGI01000002_gene1310	NA	NA
UHGV-1448031_21	Structural annotation	PF11331, TIGR02098	NA	NA
UHGV-1448031_22	Structural annotation	PF21627	NA	NA
UHGV-1448031_24	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-1448031_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1448031_28	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-1448031_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1448031_28	Structural annotation	PF16677	NA	NA
UHGV-1448031_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1448031_29	PHROG	phrog_10250	NA	unknown function
UHGV-1448031_29	UniRef90	UniRef90_A0A174NEI6	Phage terminase, large subunit	NA
UHGV-1448031_29	eggNOG-mapper	1298920.KI911353_gene4856	Phage terminase, large subunit, PBSX family	NA
UHGV-1448031_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1448031_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1448031_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1448031_30	UniRef90	UniRef90_A0A174NM20	Phage minor capsid protein	NA
UHGV-1448031_30	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-1448031_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1448031_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1448031_31	UniRef90	UniRef90_A0A174NEA4	Phage minor capsid protein 2	NA
UHGV-1448031_31	eggNOG-mapper	1298920.KI911353_gene4854	Phage minor capsid protein 2	NA
UHGV-1448031_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1448031_31	COG	COG2369	NA	NA
UHGV-1448031_31	Structural annotation	PF06152	NA	NA
UHGV-1448031_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1448031_32	UniRef90	UniRef90_A0A174NLQ6	Phage minor structural protein GP20	NA
UHGV-1448031_32	eggNOG-mapper	1151292.QEW_2434	Phage minor structural protein GP20	NA
UHGV-1448031_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1448031_32	Structural annotation	PF06810	NA	NA
UHGV-1448031_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-1448031_33	UniRef90	UniRef90_UPI001D004754	phage capsid protein	NA
UHGV-1448031_33	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-1448031_33	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1448031_34	PHROG	phrog_15682	NA	unknown function
UHGV-1448031_34	UniRef90	UniRef90_A0A841L8S8	Rho_N domain-containing protein	NA
UHGV-1448031_34	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-1448031_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1448031_35	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-1448031_36	PHROG	phrog_8710	NA	unknown function
UHGV-1448031_36	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-1448031_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1448031_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1448031_37	UniRef90	UniRef90_UPI0003798593	minor capsid protein	NA
UHGV-1448031_37	eggNOG-mapper	1298920.KI911353_gene4846	NA	NA
UHGV-1448031_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1448031_38	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1448031_38	UniRef90	UniRef90_UPI00045E84DA	minor capsid protein	NA
UHGV-1448031_38	eggNOG-mapper	1298920.KI911353_gene4845	NA	NA
UHGV-1448031_38	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1448031_38	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1448031_39	PHROG	phrog_820	major tail protein	tail
UHGV-1448031_39	eggNOG-mapper	1298920.KI911353_gene4844	NA	NA
UHGV-1448031_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1448031_40	PHROG	phrog_8300	NA	unknown function
UHGV-1448031_40	eggNOG-mapper	1298920.KI911353_gene4843	NA	NA
UHGV-1448031_40	Structural annotation	PF06896	NA	NA
UHGV-1448031_41	PHROG	phrog_8355	NA	unknown function
UHGV-1448031_41	UniRef90	UniRef90_A0A174NJB8	Bacteriophage Gp15 protein	NA
UHGV-1448031_41	eggNOG-mapper	1298920.KI911353_gene4842	Bacteriophage Gp15 protein	NA
UHGV-1448031_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1448031_41	Structural annotation	PF06854	NA	NA
UHGV-1448031_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1448031_42	UniRef90	UniRef90_A0A174NI32	Phage-like protein	NA
UHGV-1448031_42	eggNOG-mapper	1298920.KI911353_gene4841	SLT domain	NA
UHGV-1448031_42	COG	COG5412	Phage-related protein	NA
UHGV-1448031_43	PHROG	phrog_1194	NA	unknown function
UHGV-1448031_43	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1448031_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1448031_44	PHROG	phrog_13879	NA	unknown function
UHGV-1448031_44	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1448031_44	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1448031_45	PHROG	phrog_18725	NA	unknown function
UHGV-1448031_45	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1448031_46	eggNOG-mapper	585501.HMPREF6123_0821	NA	NA